Query= MSMg01no508_p06.b1 MSMg01no508_p06.b1 CHROMAT_FILE:
MSMg01no508_p06.b1 PHD_FILE: MSMg01no508_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:02 2005
(625 letters)
>mm_chr12_46277887_46278911
Length = 1025
Score = 743 bits (384), Expect = 0.0
Identities = 444/470 (94%), Gaps = 12/470 (2%)
Strand = Plus / Plus
Query: 166 agatcgatagctttcttcctctgagactgttccatggcagtgagggctgtggcctgctgt 225
|||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 358 agatcgttaactttcctcctctgagactgttccatggcactgagggctgtggcctgctgt 417
Query: 226 gctccttaagaagttgtggatatgttgg--ctgtcaactatctcagttttgcttgccaga 283
|||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 418 gctccttaggaagttgtggatatgttggatatgtcaactatctcggttttgcttgccaga 477
Query: 284 tttctctttctgaacattgagtttcagataaagcagttagacctcagctttgctgccttt 343
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tt--tctttctgaaccttgagtttcagataaagcagttagacctcagctttgctgccttt 535
Query: 344 actcaggagctagactgcttattttgtgtgtaacttcacaactgcttctggacccgctgc 403
|||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||| |
Sbjct: 536 actcaggagctagactgcttatcttgtgtgtaacttcacaactgtttctagacccgctcc 595
Query: 404 ctggcttgcagtggaatggccactatgcatatcttgctcttcaaatcctacaagctagct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ctggcttgcagtggaatggccactatgcatatcttgctcttcaaatcctacaagctagct 655
Query: 464 acataatgctttccctttccatggc--------ctcagtgtcttttaactattgcttgaa 515
|||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 656 acataatgctttccatttccatggctaaacagcctcagtgtcttttaactattgcttgaa 715
Query: 516 atgtgtctgctaggtctctcattttgtgactcatttcgatttatctttagcttctcaaag 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 atgtgtctgctaggtctctcattttgtgactcatttcgatttatctttagcttctcaaag 775
Query: 576 gcagctctctgaacatccttcctcacgtgggcagtacaggagtgagccag 625
|||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 776 gcagctctctgaacatccttccccacgtgggcagtacaggagtgagccag 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_p06.g1 MSMg01no508_p06.g1 CHROMAT_FILE:
MSMg01no508_p06.g1 PHD_FILE: MSMg01no508_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:02 2005
(596 letters)
>mm_chr12_46452601_46453595
Length = 995
Score = 1079 bits (558), Expect = 0.0
Identities = 585/594 (98%), Gaps = 1/594 (0%)
Strand = Plus / Minus
Query: 3 gtgcttttgactttgttcatgttttttgttggtatgtgctagttttgttttgttttttta 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 gtgcttttgactttgttcatgttttttgttggtatgtgctagttttgttttgttttttta 923
Query: 63 taatgaagtattatgttagttgaattcttcccagaagtagatgccaagtgcagttagaca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 taatgaagtattatgttagttgaattcttcccagaagtagatgccaagtgcagttagaca 863
Query: 123 tggaatatatttattgggagcatgttgtgaaagataaaggaaaatgagtggatgcagtca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 tggaatatatttattgggagcatgttgtgaaagataaaggaaaatgagtggatgcagtca 803
Query: 183 agaagagtgttgatactgtgataaaaaataagaacagagcactagctaaaagattaatgc 242
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 802 agaagagtgttgatactgtgat-aaaaataagaacagagcactagctaaaagattaatgc 744
Query: 243 atgtctttgttgctgctttgtgaaagttttccattagaggaatccttcttcaggcagtaa 302
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atgtcaatggtgctgctttgtgaaagttttccattagaggaatccttcttcaggcagtaa 684
Query: 303 tggacattcactagtaaaatactgtcctgtgaacttctggcacccgctgccccaaactga 362
||||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||
Sbjct: 683 tggacattcactagtaaaatactgttctgtgaacttctgggagctgctgccccaaactga 624
Query: 363 ggcaacagtattctgtgggcagcaactggaggctggcagttagctctgctacccacagaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggcaacagtattctgtgggcagcaactggaggctggcagttagctctgctacccacagaa 564
Query: 423 ggttcttataaaagagatgtaagtaccatgtattgtacatgtctatggttgctcttggta 482
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 563 ggttcttataaaagagatgtaagtaccatgtatggtacatgtctatggttgctcttggta 504
Query: 483 tttcaaggcagtgctaaaagacatgcctgtgtatttgaaggaaagaggatttgcttaagg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tttcaaggcagtgctaaaagacatgcctgtgtatttgaaggaaagaggatttgcttaagg 444
Query: 543 acagagatccacccccatggtattaaaatcattttgagtcaccgctgttgctgg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acagagatccacccccatggtattaaaatcattttgagtcaccgctgttgctgg 390
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 995
Length adjustment: 10
Effective length of query: 586
Effective length of database: 985
Effective search space: 577210
Effective search space used: 577210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
