BAC Information

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BAC

Clone NameMSMg01-509J04
Chromosome12 (Build37)
Map Location 95,084,392 - 95,084,574
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream gene2610022K04Rik-ps, EG633639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509J04.T7 (MSMg01no509_j04.b1)MSMg01-509J04.TJ (MSMg01no509_j04.g1)
ACCAG583217AG583218
length747567
length of high quality
(start - end)
189 (54 - 242)185 (56 - 240)
definitionCHROMAT_FILE: MSMg01no509_j04.b1 PHD_FILE: MSMg01no509_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:50 2005CHROMAT_FILE: MSMg01no509_j04.g1 PHD_FILE: MSMg01no509_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTATTTACTTATTTAATTATTTTTATTATTAGAAAT
CCTTCAATAGTTTAAGTTGCTTGAAAGGCATCAAAGTTTTATTCACCTTT
CTTTCATTCTCTTCTCTGCCAGACTGTTAGCATGTGGCCCAGTCTCCATA
AACACAGAATGACTTGAATTAATACCAATCACTTGATTTGNANNGTTTAT
NTNNAGTCTTATAATGGTTAAAGGGAAATGGCTACAGATGATTTACACAG
CCCTTCTCACCTAAGAAAAGTATACTTGGATAAAAAAAAATTTTGTAAAA
CAAAAANGNNNNAAANNAAAAAANNTNNNNNNNNGAAAANNNNNNNNNNN
NNNNNGGNNNNANAANAAAAAAAAAAAGAGTTGGNTTNNNGGNGTAAATT
AATTTTTTTTATTTATGATAGAAGGGTGTATATTTTTTATTTGGAGTTGG
TAGTTTTTAGGTTTTGTATGTTTTTTGTTTTTTAGGTAGGGTTTGTTTGT
ATTTGTTTATTTTATTGGTAGATTTTTTTATTAGATAGTTTTTATTTGGG
TTAATTTTTTTTTTTTTTATGTGTTTGTGATGTGTTTTGTTTTTTTTTTT
TTGTTTTGGAGAGTTTTTTGGTTGGTTTTTTTAGGAGGTTTTTTTAGNTG
TGGATTATTTTTAAAATATTTTTTTAAAATTTGTTTATATTATTTTN
NNTTCATCATGGTAGCTGGGGCGCCTGTCTCACTTAGGACTTGAATGTCC
GCGGATTCTATGATGATTATTGATCCAAGTCTTATAAAAATAATTTCTAT
ACTGTCATAAACTTCTCTGAAAAGGGTTGAATGAACACTTATTGATGGGC
GTAAATTATGTTATTAGGAGTCATTTAATTGCTATGTTCCTTTCAAAATA
ATAATGTTTTCTCCTAACCCCATGACCCTATCTAGTCTCAGTCTTGGTAC
TTTATCANNNNGGCCCCAAGGGGGANCCCCCCTGGCCCTTTNGAAAAAAA
AAAAAAATGGGGGCCCTCCCCCCAAAAAATCCCAAGGGTTTCCCCCCCGG
GGGGGTAAAAAAAAAATNTAAAAACAGTAAGGAAATATTTAAAAAAGGGT
TGTTTTTTTTCCCCCCCCCCCCCNNNCGGGCACCCGTGGGGTGGGCCCCG
GTTGATGGGAACGGTTTGGTAGGGGGGGTTCGCATTTGGTGTATCTTTTT
TTCCCCGTGTCTTTTTCCTGTTTTCTATTTTTAGGCGNATGTACGGNAGT
GGAGGCTGTTCGATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_j04.b1 MSMg01no509_j04.b1 CHROMAT_FILE:
MSMg01no509_j04.b1 PHD_FILE: MSMg01no509_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:50 2005
         (189 letters)



>mm_chr12_95084150_95084738
          Length = 589

 Score =  331 bits (171), Expect = 2e-95
 Identities = 180/183 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttatttacttatttaattatttttattattagaaatccttcaatagtttaagt 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaattctttattcacttatttaattatttttattattagaaatccttcaatagtttaagt 366

                                                                       
Query: 65  tgcttgaaaggcatcaaagttttattcacctttctttcattctcttctctgccagactgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgcttgaaaggcatcaaagttttattcacctttctttcattctcttctctgccagactgt 306

                                                                       
Query: 125 tagcatgtggcccagtctccataaacacagaatgacttgaattaataccaatcacttgat 184
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 305 aagcatgtggcccagtctccataaatacagaatgacttgaattaataccaatcacttgat 246

              
Query: 185 ttg 187
           |||
Sbjct: 245 ttg 243


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)