BAC Information

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BAC

Clone NameMSMg01-510I05
Chromosome12 (Build37)
Map Location 21,206,581 - 21,206,797
singlet/doubletsinglet
Overlap geneDdef2
Upstream geneLOC668614, LOC100042751, LOC100043371, EG668455, LOC100042755, LOC100043377, LOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698, LOC546752, EG629257
Downstream geneItgb1bp1, Cpsf3, Iah1, Adam17, Ywhaq, LOC100043407, LOC100042796, 6030426L16Rik, LOC434693, EG668645, EG668646, LOC100043416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510I05.T7 (MSMg01no510_i05.b1)MSMg01-510I05.TJ (MSMg01no510_i05.g1)
ACCAG583932AG583933
length740737
length of high quality
(start - end)
244 (81 - 324)407 (331 - 737)
definitionCHROMAT_FILE: MSMg01no510_i05.b1 PHD_FILE: MSMg01no510_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:07 2005CHROMAT_FILE: MSMg01no510_i05.g1 PHD_FILE: MSMg01no510_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:07 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NGGGGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAGAT
CCGCGGAATTCTCACCTGATGACAACAGAATGGCAGAGAAGCACCTGAAA
AAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCT
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAATCTGGTGGTT
CCTCAGAAAATTGGACATAGTACTATCTGATTATCCAGCAATACCTCTCC
TGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAATACC
CAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTA
GCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTC
ACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCA
AAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAAC
TCAAGAAGAATGAAGACTGAAGTATGGACACTATGCCCCT
GGAAGCGATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCAGAAAAATCTTCTGNCTCCACCTCCCACCT
CCACCCAGGAACACTGCGATTACAGACATGGACAAGCTTTTCATCTGGGT
TCAGGTCTTCACACTTACATGGTCCGTGGCTTACCCACTGAGCCCTCTCC
CCGGCTCCCAAGGTTTGTTTAATGAATCACCAGGAAGAAATAGCATGAAA
TACTGTTCTATAACCACCATGACACCACAGAGCTTGCTGGGAGAAGCCAC
CGTTTCTGAATGCAGATAACATAAATAATTGCACCTGCCATGGGGGTGGG
GGGCATGGCAATGCAGCTTTGGGCAATTTCCTACCTGGATTAGGCTGATT
CAGTTAAGTCCCTTCGAACAACAAAAACCTGACTGAAGACTGAAATCTCC
AATTACCTACATATACTTATAAATAAATAAATAAATAAATAAATAAATAA
ATAAATAAATAAATAGATGCACTCACATTTTTGTTTCATAGTCCTTCCAA
GCTTTATCAAAGGGCTTTTTCAGATCCTGTAAATAGAGAGGCAGCGAGTA
AGTAGTTAATCATTAACTTCTGGGCAGCACAAACATCCTCATCCCTAGAC
TGGCTCTGCACAGGACTAGTCTGAAAGGATCATGTGTGGGATCCTATAAA
AATAATAAGAGCCAGGTGTCTTTGATACACTGTAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_i05.g1 MSMg01no510_i05.g1 CHROMAT_FILE:
MSMg01no510_i05.g1 PHD_FILE: MSMg01no510_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:07 2005
         (407 letters)



>mm_chr12_21206192_21206998
          Length = 807

 Score =  412 bits (213), Expect = e-119
 Identities = 216/217 (99%)
 Strand = Plus / Minus

                                                                       
Query: 190 cactcacatttttgtttcatagtccttccaagctttatcaaagggctttttcagatcctg 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cactcacatttttgtttcatagtccttccaagctttatcaaagggctttttcagatcctg 547

                                                                       
Query: 250 taaatagagaggcagcgagtaagtagttaatcattaacttctgggcagcacaaacatcct 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 taaatagagaggcagcgagtaagtagttaatcattaacttctgggcagcacaaacatcct 487

                                                                       
Query: 310 catccctagactggctctgcacaggactagtctgaaaggatcatgtgtgggatcctataa 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 catccctagactggctctgcacaggactagtctgaaaggatcatgtgtgggatcctataa 427

                                                
Query: 370 aaataataagagccaggtgtctttgatacactgtagg 406
           ||||||||||||||||||| |||||||||||||||||
Sbjct: 426 aaataataagagccaggtgcctttgatacactgtagg 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)