NCAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCCAACACTTTCTCTAGTTTAAGCTTGGTTTTCTTACTAGCTTG
GGGATTGGCAAATAGCAGAAAGAGAACTGGAGCTTTCTTATCTCATGTGT
TTATTTTTTCCCCCATTTTACAGAGCTTCCCAATCCTCCTGAAACAAAGT
GGAAGCACTGGAAAGGGAGCAACCAAGGAAGCTTCAGGGCTCAGAATGAC
TGAGATTCTCTGACTCTTCACTGCCTCTTAAATGAGTCTATCATTTTGGA
TGTTTTGTACATGCCTATTTTTCTGACTCTCCTACAAATTAGCTGTAGAT
CTTGAAAATTATGTAGTGTAAAGATCTCTAAGCAAAATGAAGTCATTTTG
TTTCTTTTCCAATGAATATGACCAAAACTCTTTGTAGTGCTTCTCATTGA
GAGATATCCCACTCCCCTATTATATCAATTTGGTTAGCTTGTTTTGACAC
AGTAGAATGGCCTAAAAATTAAATGATATTCAATTCTTCTACCATGTGAG
GAAACACAAGATAAAAGAGAATTCACAAAGACTCTCGCTTGATTTCCTCA
ACACATCTAGTCACATTTATCGATGTTCCAAAAATATTAGTGAGGATTGA
GTACATTGGCCTAAATAAAACTATCTGGAGATGTTTTCGCTAAACCCACA
GAATAGGGAGATGGCAGGAAAACTTTTTGAGTGATGAATTGGAGTC

GCACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCCGCGAAATTCAAAATAAATCTGGATACAATAAAG
CTGATAGAAGAGAAAATAGCAAATACCCTTGAATGCACTAGTACAGGACA
CGATTTCCTGAACAGAACACCAACATCTCAGGCACAAAGATCAATAATTA
ATAAATGGAACCTAATAAAACGGATAAGCTTCTGTAACATAAAGGACACT
ATCAAATGACAAAACAGCAGCCTACTGAATGAAAATATCTTCATGAACCC
CATATCCAGGAGAGGGCTTATATTCAAAACATTTAAAGAACTCAAGAGAC
TACAGATCAATGAATCAAATAAACCAATTAAGTAATGGGGTACAGACATA
AACAGAATTCTAAAAAAGAGGAGTCTCCAATGGCCAAGAAGCAATTTAAT
TTGACATTTTAAAGAAAATTGGAAATAGTTCTACATCAAAACACAGCTAT
ACAACTGCTGGGAATATACTCAAAAATGTTGCACCATAACAAAGAACTCT
CTTGCTCAATGATGTTCGTAGCTATATTGGTAATAGCAAAAAAACTGGGA
ACAACCTAGATGTCCCTCAAAAGAATAATGAATAAAGAAAATGCACCAAA
TTCACACAATAAAATATTACTCAGCTATTAAAAACAGCAAATCTATGAAC
TTTTTCAGGAAAATTGAAGGAAATAGAAAATACTACCCTGAGTGACAN

Query= MSMg01no510_m01.b1 MSMg01no510_m01.b1 CHROMAT_FILE:
MSMg01no510_m01.b1 PHD_FILE: MSMg01no510_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:25 2005
         (675 letters)



>mm_chr12_50275260_50276332
          Length = 1073

 Score = 1166 bits (603), Expect = 0.0
 Identities = 651/667 (97%), Gaps = 2/667 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttaagcttggttttcttactagcttggggattggcaaatagcagaaagagaactgga 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 865 agtttaagcttggttttcttactatcttggggattggcaaatagcagaaagagaactaga 806

                                                                       
Query: 61  gctttcttatctcatgtgtttattttttcccccattttacagagcttcccaatcctcctg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||
Sbjct: 805 gctttcttatctcatgtgtttattttttcccccattttacagagcttcctgatccttctg 746

                                                                       
Query: 121 aaacaaagtggaagcactggaaagggagcaaccaaggaagcttcagggctcagaatgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaacaaagtggaagcactggaaagggagcaaccaaggaagcttcagggctcagaatgact 686

                                                                       
Query: 181 gagattctctgactcttcactgcctcttaaatgagtctatcattttggatgttttgtaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 685 gagattctctgactcttcactgcctcttaaatgagtctatcattttgga-gtttcgtaca 627

                                                                       
Query: 241 tgcctatttttctgactctcctacaaattagctgtagatcttgaaaattatgtagtgtaa 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 626 tgcctatttttctgactctcctacaaattagctgcagatcttgaaaattatgtagtgtaa 567

                                                                       
Query: 301 agatctctaagcaaaatgaagtcattttgtttcttttccaatgaatatgaccaaaactct 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 566 agatctctaagc-aaatgaagtcattttgtttcttttccaatgaatatgactaaaactct 508

                                                                       
Query: 361 ttgtagtgcttctcattgagagatatcccactcccctattatatcaatttggttagcttg 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 507 ttgtagtgcttctcattgagagatatcccactcccctactatatcaatttggttagcttg 448

                                                                       
Query: 421 ttttgacacagtagaatggcctaaaaattaaatgatattcaattcttctaccatgtgagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttttgacacagtagaatggcctaaaaattaaatgatattcaattcttctaccatgtgagg 388

                                                                       
Query: 481 aaacacaagataaaagagaattcacaaagactctcgcttgatttcctcaacacatctagt 540
           |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 387 aaacacaagataaaagagaattcacaaagactcttgcttgatttcctcaacgcatctagt 328

                                                                       
Query: 541 cacatttatcgatgttccaaaaatattagtgaggattgagtacattggcctaaataaaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cacatttatcgatgttccaaaaatattagtgaggattgagtacattggcctaaataaaac 268

                                                                       
Query: 601 tatctggagatgttttcgctaaacccacagaatagggagatggcaggaaaactttttgag 660
           |||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 267 tatctggagacgttttcgctaaacccacagagtggggagatggcaggaaaactttttgag 208

                  
Query: 661 tgatgaa 667
           |||||||
Sbjct: 207 tgatgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1073
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1063
Effective search space:   706895
Effective search space used:   706895
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)