Query= MSMg01no510_n23.b1 MSMg01no510_n23.b1 CHROMAT_FILE:
MSMg01no510_n23.b1 PHD_FILE: MSMg01no510_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:34 2005
(247 letters)
>mm_chr12_59733915_59734561
Length = 647
Score = 456 bits (236), Expect = e-133
Identities = 242/244 (99%)
Strand = Plus / Plus
Query: 4 gaattcatctgtgctttcataaagagctactaacaaaacattattaaatacgatggaggg 63
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcatctgtgccctcataaagagctactaacaaaacattattaaatacgatggaggg 263
Query: 64 aacagagaatatggcaaaaataagagctgttggatacttttaagataatcaggatcaaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacagagaatatggcaaaaataagagctgttggatacttttaagataatcaggatcaaca 323
Query: 124 agtgtttgcactggcaaatctgctgactttttttttggtctaagagaccttccccatatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtgtttgcactggcaaatctgctgactttttttttggtctaagagaccttccccatatg 383
Query: 184 aaaaatggccctcctgttgaatgtcaatggatggaaacttataatcctcggagggggggg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaaatggccctcctgttgaatgtcaatggatggaaacttataatcctcggagggggggg 443
Query: 244 gagg 247
||||
Sbjct: 444 gagg 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no510_n23.g1 MSMg01no510_n23.g1 CHROMAT_FILE:
MSMg01no510_n23.g1 PHD_FILE: MSMg01no510_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:34 2005
(626 letters)
>mm_chr12_59867149_59868175
Length = 1027
Score = 1145 bits (592), Expect = 0.0
Identities = 618/630 (98%), Gaps = 7/630 (1%)
Strand = Plus / Minus
Query: 1 attaagtggcaataatttttcagtggagaaacagcctaaaagaaatagatcttatgctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 attaagtggcaataatttttcagtggagaaacagcctaaaagaaatagatcttatgctgt 768
Query: 61 ggcttaagagctaggccactgagaaacaaaattgttccattctgatccttgaatcctgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ggcttaagagctaggccactgagaaacaaaattgttccattctgatccttgaatcctgcc 708
Query: 121 ccccacacccctgctgccgctgactgaccacaaggaggtatagtccattgaagagcaatg 180
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 707 ccccacaccc---ctgccgctgactgaccacaaggaggtatagtccattggagagcaatg 651
Query: 181 acctttgaagttgtcactgttcaaaacattcttcctcccgcctcctctttgtagcttttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 acctttgaagttgtcactgttcaaaacattcttcctcccgcctcctctttgtagcttttt 591
Query: 241 tgaaacattcttcaccaatg----ctgagtccccctcttcccttaattacttcttgataa 296
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 590 tgaaacattcttcaccaatgctaactgagtccccctcttcccttaattacttcttgataa 531
Query: 297 atcaatcttccaaaagtagggcacgagcatttaaataccatgtatccagtctcattaccg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 atcaatcttccaaaagtagggcacgagcatttaaataccatgtatccagtctcattaccg 471
Query: 357 atggaaaaaatctagagacttcagacgcgtgggactgaactttaaagacactggctccta 416
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 470 atggaaaaaatctagagacttcagatgtgtgggactgaactttaaagacactggctccta 411
Query: 417 tgaaaatgtacgtctatatatacagtctgtggagaattctctggaactccagatatctaa 476
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 410 tgaaaatgtacgtctatatatacagtctgtggagaattctctggaactccagctatctaa 351
Query: 477 tgaggaactgagagtatggggaaacactatggagagaatctatactgttgtgttcctccc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgaggaactgagagtatggggaaacactatggagagaatctatactgttgtgttcctccc 291
Query: 537 tctaccccctgagcctggcacaaacagttttgaatcagcccagtctcaaatggagtttga 596
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 290 tctaccccctgagcctggcacaaacagttttgaatcagcccagtctcaaatggcgtttga 231
Query: 597 aaagcattgctcagtatccaacctatgcag 626
||||||||||||||||||||||||||||||
Sbjct: 230 aaagcattgctcagtatccaacctatgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1027
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1017
Effective search space: 626472
Effective search space used: 626472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
