Query= MSMg01no511_j05.b1 MSMg01no511_j05.b1 CHROMAT_FILE:
MSMg01no511_j05.b1 PHD_FILE: MSMg01no511_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:29 2005
(575 letters)
>mm_chr12_103938055_103939029
Length = 975
Score = 1031 bits (533), Expect = 0.0
Identities = 560/569 (98%), Gaps = 2/569 (0%)
Strand = Plus / Plus
Query: 8 aaaaacaaaaacaaaacacgaag-ctacctccttgcattcataattccttcagattctcc 66
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 208 aaaaacaaaaacaaaacacg-agactacctccttgcattcataattccttcagattctcc 266
Query: 67 agctagggggctccagcagcccgtcaaagacaagggttgtaagagccagatgtaggtggt 126
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 267 agctagggggctccagcagcccatcaaagacaagggttgtaagagccagatgtaggtggt 326
Query: 127 aaagtacaacagccaccaggcagggtgggctgacctgaagttcagttccactagccccac 186
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 327 aaagtacaacagccaccaggcagggtgggctgacctgaggttcagttccactagccccac 386
Query: 187 ctcttagcaagagagtcagttagcaatgatcacagaccgtacccgcaaaaacttagtcca 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctcttagcaagagagtcagttagcaatgatcacagaccgtacccgcaaaaacttagtcca 446
Query: 247 aggtcactaaatctacaaagccaaatgggcatcacatggatggtcagttgtgaacccagc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aggtcactaaatctacaaagccaaatgggcatcacatggatggtcagttgtgaacccagc 506
Query: 307 cttggaaacctaggcagtttttaaccaaagacatctatctacccccacagcaggtccagt 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 507 cttggaaacctaggcagtttttaaccaaagacatctatctacccccacagcaggtctagt 566
Query: 367 ctgtacccaagagctggagaaagagatttatttgcaaggctgggttacatttttcatggg 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctgtacccaagagctggagaaagagatttatttgcaaggctgggttacatttttcatggg 626
Query: 427 ctgctgtaaagtgaacctgactcaggatgcctctctctatcacagctctgaggtcatagc 486
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctgctgtaaattgaacctgactcaggatgcctctctctatcacagctctgaggtcatagc 686
Query: 487 aaagccaactactaaaatatacagaaaaatgccgggctacagaccagcaccattcaatcc 546
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaagccagctactaaaatacacagaaaaatgccgggctacagaccagcaccattcaatcc 746
Query: 547 tggtaacgagcctctcctctccccctgca 575
||||||||||||||| |||||||||||||
Sbjct: 747 tggtaacgagcctcttctctccccctgca 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_j05.g1 MSMg01no511_j05.g1 CHROMAT_FILE:
MSMg01no511_j05.g1 PHD_FILE: MSMg01no511_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:29 2005
(490 letters)
>mm_chr12_104099326_104100215
Length = 890
Score = 924 bits (478), Expect = 0.0
Identities = 487/490 (99%)
Strand = Plus / Minus
Query: 1 ttcgtatgtgctactgtctccccagttttctgtgagtctttcctgattgcagtttccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ttcgtatgtgctactgtctccccagttttctgtgagtctttcctgattgcagtttccatt 631
Query: 61 tctaagcacctcatttattaataagtattcactaccagccaggcattcttgacagtcctt 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 630 tctaagcacctcatttattaataagtattcactaccagccagccattcttgacagtcctt 571
Query: 121 ggcatatatagttaatgaagtaagacacagttctaatcctgtggggacatagtctgctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ggcatatatagttaatgaagtaagacacagttctaatcctgtggggacatagtctgctga 511
Query: 181 gggcttagacagtgtctgctcctttacagagaaagaagcagtgcagctgaagtctgtgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gggcttagacagtgtctgctcctttacagagaaagaagcagtgcagctgaagtctgtgta 451
Query: 241 catttctggcagcagagaacagggatgctctctcagttttaagtgaacctcatttaaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 catttctggcagcagagaacagggatgctctctcagttttaagtgaacctcatttaaatg 391
Query: 301 ccatttcttccctgtagcctgttctggccccacccagcctaatatatgttttccatactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ccatttcttccctgtagcctgttctggccccacccagcctaatatatgttttccatactt 331
Query: 361 ttcctcatttcttcagccccagcatttagtgcctgttcatttttctctgccccttcacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttcctcatttcttcagccccagcatttagtgcctgttcatttttctctgccccttcacag 271
Query: 421 aatattcagcgtctcagctgaaatatcccaatttctttaaaaaactattttgagacaagg 480
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aatagtcagtgtctcagctgaaatatcccaatttctttaaaaaactattttgagacaagg 211
Query: 481 actctcactg 490
||||||||||
Sbjct: 210 actctcactg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
