BAC Information

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BAC

Clone NameMSMg01-512A12
Chromosome12 (Build37)
Map Location 94,249,932 - 94,288,067
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039387, LOC100039425, LOC628116
Downstream gene2610022K04Rik-ps, EG633639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512A12.T7 (MSMg01no512_a12.b1)MSMg01-512A12.TJ (MSMg01no512_a12.g1)
ACCAG585086AG585087
length722737
length of high quality
(start - end)		680 (43 - 722)609 (72 - 680)
definitionCHROMAT_FILE: MSMg01no512_a12.b1 PHD_FILE: MSMg01no512_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:03 2005CHROMAT_FILE: MSMg01no512_a12.g1 PHD_FILE: MSMg01no512_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,287,393 - 94,288,067)(94,249,932 - 94,250,540)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATCTCTTGACTCCTAAAATTATAGCTCATAGGTTGTTACACAATATTT
TTCTGTTAAATTGTACTTAGGAACACTGAGTAGGAAACAACTTCCAGAAA
TTGTAACTAATGACATAAACACTGCCAGGATCATGATCAAGATTAGTTCA
AACTAGCTTCTTTGTAACACTATGAATCTAAATATCTTTGACTTCTCAAA
AATAATAATATAAATAACAGCCATATGTCTGTAAGATTTTGACACAAGAA
TCATCTCACTTAAAAAATTTTAAAGTAGTGCCCTATGTCATAAGGTAACA
CCTATATTTCTGTATTTCAAGAGTCATATAATGCCTGCTAGCATCAGAAC
ATATAATACTAAACTAAATAAATTTAGACAAAGATATAATATATTTAAGC
TTTCATATTATGAATAAAACATCATCTATACCAAATAGCTTATTTAGTTT
GTTTAAGATGTGCAATGTGATTTAAGAATACATATTGCCAAGTGAGACTG
CATCATCTTTTTATTTGCATGAAATTACTGTGCAAGTTTATTTTACATGA
ATTCAACTGACTTGAATATCATAGATACAAAGTTTTATCAAACATAGATA
TCTAATTGAATATTTTGAATTCCTTCTGAGATATGCAAAACTTTCATGTT
TACATAAATTTAGGTAGCTGTN

TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATCTATCTGTGCTAGTGTTTGACATTCTG
TGCTATTAATTTTCTGATATTACTTATGCTTACGTCTATCTTTCCTAAAG
AATGATTAGTCCCCTTTGGGGACATCAGACATTCATTATTTATCTTTGTA
TCCATCTCAATAATCCTCTTACAATGTGCCCCTTGACACATTGTGATGTT
AAATCTTCCTACATCAGGGTAGATATTGAATGTTCTGGCAGACCATAAAG
TAACTGTTATGACAAATGCTGCAAACCTGAATGGAACATCTGGGAACAAC
ATGACAGGGGCACTAGGGGTGACAGCTGTGCATACAGCAAAAGCTCAAAT
TCTGAGCACTTCCTGGGAAGTAAACAGAAAATAGAGTGACAGCATTTGCA
AATATAATGTCCTGTGGGTACATTCCACATCTCTGAGCTGCCATGATTGG
AAAAAAAAAAAACCCAGAGTCCATTATGAAAAACCTCTACCAGTCACCCT
TTTAAGCTTCATTGATTTTTATGCACAAAATAATGACATATTTGAGAATG
ATAAAAGGATGGAGCCAATAAATAAGGAAGCAGGGAAACCACAAGCCACT
ACAGAGTTGTAATTACTGTTGGATTTTTAAAAACAAAACCAGGATTCTAT
TCAGGATGTGATCTTCTATTATGAATGTGTGGGCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_a12.b1 MSMg01no512_a12.b1 CHROMAT_FILE:
MSMg01no512_a12.b1 PHD_FILE: MSMg01no512_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:03 2005
         (680 letters)



>mm_chr12_94287189_94288268
          Length = 1080

 Score = 1274 bits (659), Expect = 0.0
 Identities = 671/675 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctcttgactcctaaaattatagctcataggttgttacacaatatttttctgt 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 879 gaattcatctcttgactcctaaaattatagctcacaggttgttacacaatatttttctgt 820

                                                                       
Query: 65  taaattgtacttaggaacactgagtaggaaacaacttccagaaattgtaactaatgacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 taaattgtacttaggaacactgagtaggaaacaacttccagaaattgtaactaatgacat 760

                                                                       
Query: 125 aaacactgccaggatcatgatcaagattagttcaaactagcttctttgtaacactatgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aaacactgccaggatcatgatcaagattagttcaaactagcttctttgtaacactatgaa 700

                                                                       
Query: 185 tctaaatatctttgacttctcaaaaataataatataaataacagccatatgtctgtaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tctaaatatctttgacttctcaaaaataataatataaataacagccatatgtctgtaaga 640

                                                                       
Query: 245 ttttgacacaagaatcatctcacttaaaaaattttaaagtagtgccctatgtcataaggt 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 639 ttttgacacaagaatcatctcacttaaaaaattttaaagtagtgtcctatgtcataaggt 580

                                                                       
Query: 305 aacacctatatttctgtatttcaagagtcatataatgcctgctagcatcagaacatataa 364
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aacacctatatttctatatttcaagagtcatataatgcctgctagcatcagaacatataa 520

                                                                       
Query: 365 tactaaactaaataaatttagacaaagatataatatatttaagctttcatattatgaata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tactaaactaaataaatttagacaaagatataatatatttaagctttcatattatgaata 460

                                                                       
Query: 425 aaacatcatctataccaaatagcttatttagtttgtttaagatgtgcaatgtgatttaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaacatcatctataccaaatagcttatttagtttgtttaagatgtgcaatgtgatttaag 400

                                                                       
Query: 485 aatacatattgccaagtgagactgcatcatctttttatttgcatgaaattactgtgcaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 399 aatacatattgccaagtgagactgcatcatctttttatttgcatgaaattattgtgcaag 340

                                                                       
Query: 545 tttattttacatgaattcaactgacttgaatatcatagatacaaagttttatcaaacata 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tttattttacatgaattcaactgacttgaatatcatagatacaaagttttatcaaacata 280

                                                                       
Query: 605 gatatctaattgaatattttgaattccttctgagatatgcaaaactttcatgtttacata 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gatatctaattgaatattttgaattccttctgagatatgcaaaactttcatgtttacata 220

                          
Query: 665 aatttaggtagctgt 679
           |||||||||||||||
Sbjct: 219 aatttaggtagctgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_a12.g1 MSMg01no512_a12.g1 CHROMAT_FILE:
MSMg01no512_a12.g1 PHD_FILE: MSMg01no512_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:03 2005
         (609 letters)



>mm_chr12_94249732_94250740
          Length = 1009

 Score = 1139 bits (589), Expect = 0.0
 Identities = 604/609 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctatctgtgctagtgtttgacattctgtgctattaattttctgatattacttatgctt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 atctatctgtgctagtgtttgacattctgtgttattaattttctgatattacttatgctt 260

                                                                       
Query: 61  acgtctatctttcctaaagaatgattagtcccctttggggacatcagacattcattattt 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgtctatctttcctaaagcatgattagtcccctttggggacatcagacattcattattt 320

                                                                       
Query: 121 atctttgtatccatctcaataatcctcttacaatgtgccccttgacacattgtgatgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctttgtatccatctcaataatcctcttacaatgtgccccttgacacattgtgatgtta 380

                                                                       
Query: 181 aatcttcctacatcagggtagatattgaatgttctggcagaccataaagtaactgttatg 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 381 aatcttactacatcagggtagatattgaatgttctggcagaccataaagtggctgttatg 440

                                                                       
Query: 241 acaaatgctgcaaacctgaatggaacatctgggaacaacatgacaggggcactaggggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaatgctgcaaacctgaatggaacatctgggaacaacatgacaggggcactaggggtg 500

                                                                       
Query: 301 acagctgtgcatacagcaaaagctcaaattctgagcacttcctgggaagtaaacagaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagctgtgcatacagcaaaagctcaaattctgagcacttcctgggaagtaaacagaaaa 560

                                                                       
Query: 361 tagagtgacagcatttgcaaatataatgtcctgtgggtacattccacatctctgagctgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagagtgacagcatttgcaaatataatgtcctgtgggtacattccacatctctgagctgc 620

                                                                       
Query: 421 catgattggaaaaaaaaaaaacccagagtccattatgaaaaacctctaccagtcaccctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catgattggaaaaaaaaaaaacccagagtccattatgaaaaacctctaccagtcaccctt 680

                                                                       
Query: 481 ttaagcttcattgatttttatgcacaaaataatgacatatttgagaatgataaaaggatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaagcttcattgatttttatgcacaaaataatgacatatttgagaatgataaaaggatg 740

                                                                       
Query: 541 gagccaataaataaggaagcagggaaaccacaagccactacagagttgtaattactgttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagccaataaataaggaagcagggaaaccacaagccactacagagttgtaattactgttg 800

                    
Query: 601 gatttttaa 609
           |||||||||
Sbjct: 801 gatttttaa 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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