BAC Information

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BAC

Clone NameMSMg01-512J18
Chromosome12 (Build37)
Map Location 61,001,594 - 61,001,991
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
Downstream geneEG622488, LOC665665, Ppia-ps12_475.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512J18.T7 (MSMg01no512_j18.b1)MSMg01-512J18.TJ (MSMg01no512_j18.g1)
ACCAG585529AG585530
length743777
length of high quality
(start - end)		402 (38 - 439)535 (68 - 602)
definitionCHROMAT_FILE: MSMg01no512_j18.b1 PHD_FILE: MSMg01no512_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:49 2005CHROMAT_FILE: MSMg01no512_j18.g1 PHD_FILE: MSMg01no512_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTC
TGTGCCTTCAGCACCAGATTGGAACTTCTAGGACATGTAGCTTTGTACAG
TAAGCAGCTATTCGGTTCTGAAATTTTATAGTCTAAAGACAGCCACTGGT
ATACTTGTATGTTAACCTAAAAGTGTCACCTTCATTATATTCATTCTTCC
ATTCTGTTCCTCTAGAAATCCAGCACAGATGTTTTCTCTTTCATTTCTCT
CTTTATCCAGGTATAGATAGATATATGTCCTTCAGATCTTCTTTTCTAAT
AATGAATCTTTATCCTCTTGAATCAAGCACAACTACAACCCACTCTTGCC
TCCTATATTATTCCTAACAGCTAAGCTTTGGGCAGTATAGAAAGTAAGAA
AGCAAGTGATGCATGACTGTAATCCCAGCCCTCAGGAGGCAGAGGCAGAG
GCAGGAAGTCCCCAAGATAAAAGCCAGTCTGGGATTATATAGTAAGTTCC
AGGGGGCCTGGNCCATGTATNCAGATCCCTGTACAAATACNATGGACAGA
GAGAACAAATGGGAAAAGAAATCTGTTTCTCTTGTNGCACCACATCACTC
CATTCCCTGGNCTAACAAAAAGGGCCAGAGCTAAGTATATGCTCACCACG
AACTTTTCCCCGGNTCCTATTTACAAATCTTATTTTATTGAGCTCACAAA
TGTCCCCGNACACTGGGAAATTAATTCCCTTTTGAATGACATC

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTCTTGCACCTGCGTACAAGGCTTGTTTACTA
GTTAGGCACAGCGGAGGCCCGCGCCATCTTATAATGGTGATTGCTTGCGG
CACACACGGCTCTCCTCAGAGATTACTGGAGGCACACATGCGATTGCTCG
CAGCACGTACCGGCTCTCCACATGAACCAAGTTTATTTACTGAAGTATTA
ATCCTCAAAGATAGTTGAAGTTTGAAGAGTGATTAGGTCTTGTCAGTGGG
GTTCCCAGGAGTGATAGTATTCTTACTGAAGAAATCAAGGAGAAATTGTC
TCACCTTTTCTACCTTGGGAAGGTATACCTGGGAGTTATCATCGAAAAGA
CAGAAAATGGGTTGTCATCATAAACTAAATATACTAATACCTTGATCTGG
GACTCAGCCTCTAGAGTGGTGAGATTTAAATTTATATTTATAAACTATCC
TGTTTTGAGCTATTGTCATAGAAGTTCAAAGGATGAAGTAAGTTTCAAGA
ATGGCTGGAGGATCAAGATATTGGAAGTATTTTAAGGGGTATGTCTGAGA
TAGGAGGATCTCTAGGTTTCTGTGTAGAAGTGAATTGAGATTTCCTGTTA
ATTGATGAGAATTTGAGGGTATATATAGGTTGCATATTGTACACACACAC
ACACACACACACACACAGAGAGAGAGAGACACACACACACCGTGATTGCT
TTTCTTGTTGAGGAGAATTTTGTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_j18.b1 MSMg01no512_j18.b1 CHROMAT_FILE:
MSMg01no512_j18.b1 PHD_FILE: MSMg01no512_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:49 2005
         (402 letters)



>mm_chr12_61001276_61002077
          Length = 802

 Score =  762 bits (394), Expect = 0.0
 Identities = 397/398 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctctgtgccttcagcaccagattggaacttctaggacatgtagctttgtacagt 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gaattcctctgagccttcagcaccagattggaacttctaggacatgtagctttgtacagt 657

                                                                       
Query: 65  aagcagctattcggttctgaaattttatagtctaaagacagccactggtatacttgtatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 aagcagctattcggttctgaaattttatagtctaaagacagccactggtatacttgtatg 597

                                                                       
Query: 125 ttaacctaaaagtgtcaccttcattatattcattcttccattctgttcctctagaaatcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ttaacctaaaagtgtcaccttcattatattcattcttccattctgttcctctagaaatcc 537

                                                                       
Query: 185 agcacagatgttttctctttcatttctctctttatccaggtatagatagatatatgtcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 agcacagatgttttctctttcatttctctctttatccaggtatagatagatatatgtcct 477

                                                                       
Query: 245 tcagatcttcttttctaataatgaatctttatcctcttgaatcaagcacaactacaaccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tcagatcttcttttctaataatgaatctttatcctcttgaatcaagcacaactacaaccc 417

                                                                       
Query: 305 actcttgcctcctatattattcctaacagctaagctttgggcagtatagaaagtaagaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 actcttgcctcctatattattcctaacagctaagctttgggcagtatagaaagtaagaaa 357

                                                 
Query: 365 gcaagtgatgcatgactgtaatcccagccctcaggagg 402
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gcaagtgatgcatgactgtaatcccagccctcaggagg 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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