Query= MSMg01no512_o14.b1 MSMg01no512_o14.b1 CHROMAT_FILE:
MSMg01no512_o14.b1 PHD_FILE: MSMg01no512_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:14 2005
(706 letters)
>mm_chr12_51561592_51562692
Length = 1101
Score = 1218 bits (630), Expect = 0.0
Identities = 682/704 (96%), Gaps = 11/704 (1%)
Strand = Plus / Plus
Query: 4 ggaattcagtgatacaccctgcctcagtacttaaagaaaggaagaaaacatcagatatta 63
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggaattcagtgagagaccctgcctcagtacttaaagaaaggaagaaaacatcagatatta 267
Query: 64 gcttctggattccacattcagcagtacatttgcaaacatacatacacatatgcaacacac 123
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gcctctggattccacattcagcagtacatttgcaaacatacatacacatatgcaacacac 327
Query: 124 acatatacatatatatgtaatacacacacacatatatacacatatagtatcataatatca 183
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 328 acatatacatatatatgtaatacacacacacata----cacatatagtatcataatatca 383
Query: 184 taaattaagattatacctaccaagtagctcttggggtaggaaagcacagttattttttaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaattaagattatacctaccaagtagctcttggggtaggaaagcacagttattttttaa 443
Query: 244 tatttccaattgattttgagaagcagttaaacattggaaagatcgatggaatctaatgtt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatttccaattgattttgagaagcagttaaacattggaaagatcgatggaatctaatgtt 503
Query: 304 aatctaatctaatctccatgaaaatgaggactttttttgcaagaatctttttatatgaat 363
|| ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 504 aa---aat---atctccatgaaaatgagcactttttttgcaagaatctttttataggaat 557
Query: 364 ctcaaaagcaccagggtcccattccctggggatatatatcacactattaagtcataggta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctcaaaagcaccagggtcccattccctggggatatatatcacactattaagtcataggta 617
Query: 424 cacaattagtcatgcatgtcatgagttaatttttccaaccatgttatggaatagatcttg 483
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cacaatcagtcatgcatgtcatgagttaatttttccaaccatgttatggaatagatcttg 677
Query: 484 ataaa-ccttgtatacccaaggtaaattttctcacggcacattcatttttacattaagtg 542
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 678 ataaaaccttgtatacccaaggtaaattttctcacggcacattcatttttacattaagag 737
Query: 543 acagacaaacaaacaaacatacaaaaacccctaaaggtgcaataggggcacctatacctt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 acagacaaacaaacaaacatacaaaaacccctaaaggtgcaataggggcacctatacctt 797
Query: 603 gattataactaacagcttcctagttggaaataaagcctgctaaataagatgaaaatcatg 662
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 798 gattgtaactaacagcttcctagttggaaataaagactgctaaataagatgaaaatcatg 857
Query: 663 tctgacaactgtaagcctgtggagagccatgctgcgagcaatcg 706
||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 858 tctgacaactgcaagcctgtggagagccgtgctgcgagcaatcg 901
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1101
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1091
Effective search space: 759336
Effective search space used: 759336
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no512_o14.g1 MSMg01no512_o14.g1 CHROMAT_FILE:
MSMg01no512_o14.g1 PHD_FILE: MSMg01no512_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:14 2005
(617 letters)
>mm_chr12_51726846_51727864
Length = 1019
Score = 1106 bits (572), Expect = 0.0
Identities = 606/618 (98%), Gaps = 2/618 (0%)
Strand = Plus / Minus
Query: 2 tttctgtctggatgcgtgcgtcacatgtctaagatactttaaaggtttctctagttcttt 61
|||||||||||||| ||| |||||| |||||||||||||| | | ||| |||||||||||
Sbjct: 819 tttctgtctggatgtgtgtgtcacaggtctaagatactttgacgatttttctagttcttt 760
Query: 62 gttttcattgactttagctcttgacagcacagattttcacctcacatgctttagatttta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gttttcattgactttagctcttgacagcacagattttcacctcacatgctttagatttta 700
Query: 122 tgctttgctgtcttcctgtccctggtttactttgtcacacagctggaagcctcttgggca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tgctttgctgtcttcctgtccctggtttactttgtcacacagctggaagcctcttgggca 640
Query: 182 ttcttaagtcctcaggggctgaccttctccagagttatcacccatgctgctaggtggata 241
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ttcttaagtccacaggggctgaccttctccagagttatcacccatgctgctaggtggata 580
Query: 242 tggtttcttagtctctggaatcctgttgcttgttaatataatatacagttcttgatgaag 301
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 579 tggtttcttagtctctggaatcctgttgcttgttaatataatatgcagttcttgatgaag 520
Query: 302 actggtgtctctcaagtgcaaacactgtgctggggtgcacagctgcatgctgccaacttg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 actggtgtctctcaagtgcaaacactgtgctggggtgcacagctgcatgctgccaacttg 460
Query: 362 aagggaaagcatcctctagaggtctccttgggagggcgtgtctagcccttaacgctttag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aagggaaagcatcctctagaggtctccttgggagggcgtgtctagcccttaacgctttag 400
Query: 422 cagggctgtattgttgctcaagaaggcctcatgggcagaggaaagcttggttgcagccct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cagggctgtattgttgctcaagaaggcctcatgggcagaggaaagcttggttgcagccct 340
Query: 482 acttccagattattctagaactcacttgcttttcctcagtgcaagatgttcacttctctt 541
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 339 acttccagattattctagaactcacttgcttttcctcagtccaagatgttcacttctctt 280
Query: 542 tcctggcaatagtattttaagaagtaaaaaatgtt--aaaaaaaaaaaaagaagtgttat 599
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 279 tcctggcaatagtattttaagaagtaaaaaatgttaaaaaaaaaaaaaaagaagtgttat 220
Query: 600 ctcactgtgaattcttca 617
||||||||||||||||||
Sbjct: 219 ctcactgtgaattcttca 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1019
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1009
Effective search space: 612463
Effective search space used: 612463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
