Query= MSMg01no513_e05.b1 MSMg01no513_e05.b1 CHROMAT_FILE:
MSMg01no513_e05.b1 PHD_FILE: MSMg01no513_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:42 2005
(700 letters)
>mm_chr12_87600231_87601331
Length = 1101
Score = 1272 bits (658), Expect = 0.0
Identities = 688/698 (98%), Gaps = 1/698 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttgtttctgagacagctgtttgcagcgtatgtttctagtgagcatggttatac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttgtttctgagacagctgtttgcagcgtatgtttctagtgagcatggttatac 263
Query: 64 accccagagcagcttctttagtgtttggtggtatagctgctatttgcaggatacaggtct 123
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 264 accccagagcagcttctttagtgtttggtggtatagctgctatttgcaggacacaggtct 323
Query: 124 cactgcccccttggagagttgcacattaattctaagagtcattattattttgggtgtcag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cactgcccccttggagagttgcacattaattctaagagtcattattattttgggtgtcag 383
Query: 184 tggggaggcgggatctgctgtgtgttagaggacgaaggcaacatgaactctagttactgc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggggaggcgggatctgctgtgtgttagaggacgaaggcaacatgaactctagttactgc 443
Query: 244 tgtaatattttactgtactcctgtagtctggaaaggggatggcatgtcttgttgctggca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtaatattttactgtactcctgtagtctggaaaggggatggcatgtcttgttgctggca 503
Query: 304 ggaatacactgtagtggaaactgagctgatgttattgtagctagttggaagtttgagccc 363
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaatacactgtagcggaaactgagctgatgttattgtagctagttggaagtttgagccc 563
Query: 364 agagtttgaatgcatgggttcgtcgggatcttaatgaacagcgtgggcttgggcaaatga 423
|||||||||||| ||||||| ||||||||||||||||| |||||||||| |||||||||
Sbjct: 564 agagtttgaatgtatgggttagtcgggatcttaatgaatagcgtgggctcaggcaaatga 623
Query: 424 cgtagttcttgaaaagccttagggagttttattgcttgttactgtggttggtttttt-cc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 624 cgtagttcttgaaaagccttagggagttttattgcttgttactgtggttggtttttttcc 683
Query: 483 tggatttctagttcagaattgttttctgtcctatcaatgagataccaaggctaaaacaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tggatttctagttcagaattgttttctgtcctatcaatgagataccaaggctaaaacaaa 743
Query: 543 gtgtgggcttacattctttactgatctattatgataaaatgtaaatatataatacccccg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtgtgggcttacattctttactgatctattatgataaaatgtaaatatataatacccccg 803
Query: 603 ccccagcaataacagctaatttttggattgaggaacatttatggctttgaactctattta 662
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccccagcaataatagctaatttttggattgaggaacatttatggctttgaactctattta 863
Query: 663 tttacaccatggataatggccagaaacacagtttgttt 700
||||||||||||||||||| ||||||||||||||||||
Sbjct: 864 tttacaccatggataatggtcagaaacacagtttgttt 901
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1101
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1091
Effective search space: 752790
Effective search space used: 752790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_e05.g1 MSMg01no513_e05.g1 CHROMAT_FILE:
MSMg01no513_e05.g1 PHD_FILE: MSMg01no513_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:42 2005
(546 letters)
>mm_chr12_87760967_87761912
Length = 946
Score = 996 bits (515), Expect = 0.0
Identities = 544/565 (96%), Gaps = 20/565 (3%)
Strand = Plus / Minus
Query: 1 ccagctatcagcgcacctgcagccctgtctgcctctccctctatgaaccagaacatt--- 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ccagctatcagcgcacctgcagccctgtctgcctctccctctatgaaccagaacattatg 762
Query: 58 ---------------atgggccgccactgtaccaaaatgagccataagtcaagtctcaac 102
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ggccgccactgtaccatgggccgccactgtaccaaaatgagccataagtcaagtctcaac 702
Query: 103 tcttcttgtggggcttttcaccttggggatatacctgccacagggataataatcaatttg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tcttcttgtggggcttttcaccttggggatatacctgccacagggataataatcaatttg 642
Query: 163 attatgtgtgctggtgtggatacagaattatttaaaagggggaggaaaagccctcaggag 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 attatgtgtgctggtgtggatacagaattatttaaaagggggaggaaaagccctcaggag 582
Query: 223 agagtattaccttagtctctacaaaagacaatgaacagtgttggggtgtgtgtgtgggg- 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 581 agagtattaccttagtctctacaaaagacaatgaacagtgttggggtgtgtgtg-gggga 523
Query: 282 agggggatataattttatcaccaaaataatgtctaagcagagtgtacctgtaggcagtgc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agggggatataattttatcaccaaaataatgtctaagcagagtgtacctgtaggcagtgc 463
Query: 342 tatgtgtttggggaataaagccaagagggcgagagggcgggtgctgagagcctcaggagg 401
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 462 tatgtgtttggggaataaagccgagagggcgagagggcgggtgctgagagcctcaggagg 403
Query: 402 ggttagccactgtggagggacttagggagtaggtgctagcttcaaggggcgatgtttgac 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ggttagccactgtggagggacttagggagtaggtgctagcttcaaggggcgatgtttgac 343
Query: 462 ttgaacaaatgcactagtcaaggctggcgagggcagctgacactgtccacatgtgctgaa 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttgaacaaatgcactagtcaaggctggcgagggcagctgacactgtccacatgtgctgaa 283
Query: 522 gtggaggaaagtgtggggtggacct 546
|||||||||||||||||||||||||
Sbjct: 282 gtggaggaaagtgtggggtggacct 258
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
