Query= MSMg01no513_g09.b1 MSMg01no513_g09.b1 CHROMAT_FILE:
MSMg01no513_g09.b1 PHD_FILE: MSMg01no513_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:53 2005
(703 letters)
>mm_chr12_66723484_66724589
Length = 1106
Score = 1323 bits (684), Expect = 0.0
Identities = 697/702 (99%), Gaps = 3/702 (0%)
Strand = Plus / Plus
Query: 5 gaattcactgatacaataactctaccagcagctaagcaatatccacaaggtcacagagat 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgagacaataactctaccagcagctaagcaatatccacaaggtcacagagat 264
Query: 65 attaaaacaagaaaacaaccaaattatttgaattgtcttaaattatgaactaatttggta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attaaaacaagaaaacaaccaaattatttgaattgtcttaaattatgaactaatttggta 324
Query: 125 ttccccccccccc--tgattttctggccaatggaacagcatcttatgcatctctttctag 182
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttccccccccccccctgattttctggccaatggaacagcatcttatgcatctctttctag 384
Query: 183 tgagattaaagtttcataccccaggcctacctagttactacatttgactctgtttcagga 242
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgagtttaaagtttcataccccaggcctacctagttactacatttgactctgtttcagga 444
Query: 243 gttaacatagagttttgattttttttttt-atgattccttctttctcactaacactcaag 301
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 gttaacatagagttttgattttttttttttatgattccttctttctcactaacactcaag 504
Query: 302 attagtaatgtagaaactgcagacttcaagagagctgatagatgggcccagtaagtacct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attagtaatgtagaaactgcagacttcaagagagctgatagatgggcccagtaagtacct 564
Query: 362 ttaaaaatagcaaatggtcaaacctgacctttggatgctgacagcggaggggtaattgca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttaaaaatagcaaatggtcaaacctgacctttggatgctgacagcggaggggtaattgca 624
Query: 422 ttgaaatcatttcccttccagggagagaggcttgctgagaattggcttcctgcttaaata 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgaaatcatttcccttccagggagagaggcttgctgagaattggcttcctgcttaaata 684
Query: 482 gaacagggttattttatccttacaagtgaatcttctgacactttgaagccaagtgtcatt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaacagggttattttatccttacaagtgaatcttctgacactttgaagccaagtgtcatt 744
Query: 542 acttttgtctggcttgtggattgctggattctccataagtgtgatttaatagcctggatc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acttttgtctggcttgtggattgctggattctccataagtgtgatttaatagcctggatc 804
Query: 602 tgtcatgaaatatttatagctttttgtgccttgaagattttgggttttacttataaccac 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgtcatgaaatatttatagctttttgtgccttgaagattttgggttttacttataaccac 864
Query: 662 attattaatgaaatggcttatatataacatgacacaatatag 703
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 attattaatgaaatggcttatatataacatgacacaatatag 906
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1106
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1096
Effective search space: 759528
Effective search space used: 759528
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no513_g09.g1 MSMg01no513_g09.g1 CHROMAT_FILE:
MSMg01no513_g09.g1 PHD_FILE: MSMg01no513_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:53 2005
(682 letters)
>mm_chr12_66915854_66916932
Length = 1079
Score = 1143 bits (591), Expect = 0.0
Identities = 656/679 (96%), Gaps = 5/679 (0%)
Strand = Plus / Minus
Query: 5 cgaccctcagggagtgactgaaatcaaaatccacgaacaggaagagaaggaagcaaaact 64
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 879 cgaccctcagggagtgattgaaatcaaaatccatgaacaggaagagaaggaagcaaaact 820
Query: 65 gagcagagaaagatgttgctactgttgttagttccaaacatgagatgaacaaactgggat 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 gagcagagaaa---gttgctactgttgttagttccaaacatgagatgaacaaactgggat 763
Query: 125 gatggaaataagctttcactgcttctcgatggcttagttataagttggagagcatgggat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gatggaaataagctttcactgcttctcgatggcttagttataagttggagagcatgggat 703
Query: 185 gtaaaaaaaatcattgcctgattattgacaactcaatgaagtggccttggtgactttggg 244
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gt-aaaaaaatcattgcctgattattgacaactcaatgaagtggccttggtgactttggg 644
Query: 245 aggtaaaatagttagaactatcacttctctctcttggaactcccccaggaatctgagcat 304
|||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 643 aggtaaaataattagaactatcacttctctctcttagaactccccaaggaatctgagcat 584
Query: 305 actattcccttggagtgactacagctttcatatgtctttacagtctg-aagccttatctg 363
||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct: 583 actattcacttggagtgactacagctttcatatctctttatagtctgaaagccttatctg 524
Query: 364 actttgtaagctcttcagaataaacctatcacatgaggactggattctctccataaacaa 423
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 523 actttgtaacctcttcagaataaacctatcacatgaggagtggattctctccatacacaa 464
Query: 424 cctcttctgttcccatatctgcatgttagctgggcttctaggcggatgcacaaatgccac 483
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 463 cctcttcttttcccatatctgcatactagctgggcttctaggcggatgcacaaatgccac 404
Query: 484 ggccttagaaagtccatctcttacccagttagaagatatccatccttgctcttttctcct 543
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 403 agccttagaaaatccatctcttacccagttagaagatatccatccttgctcttttctctt 344
Query: 544 cccgtatgcaaagtttttctcatagcagttatgttttataaatgtatatcagaaagtaat 603
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 343 cccgtatgcaaagtttttctcatagcagttatgttttataaatttatatcagaaagtaat 284
Query: 604 acaaacacctaaaataacaaattcacagaataaaatctgtatgttataaaatggttaacc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 acaaacacctaaaataacaaattcacagaataaaatctgtatgttataaaatggttaacc 224
Query: 664 ttttgacattgaattatat 682
|||||||||||||||||||
Sbjct: 223 ttttgacattgaattatat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1079
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1069
Effective search space: 718368
Effective search space used: 718368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
