BAC Information

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BAC

Clone NameMSMg01-514G10
Chromosome12 (Build37)
Map Location 27,548,583 - 27,717,626
singlet/doubletdoublet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514G10.T7 (MSMg01no514_g10.b1)MSMg01-514G10.TJ (MSMg01no514_g10.g1)
ACCAG586895AG586896
length706726
length of high quality
(start - end)		627 (47 - 673)647 (73 - 719)
definitionCHROMAT_FILE: MSMg01no514_g10.b1 PHD_FILE: MSMg01no514_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:17 2005CHROMAT_FILE: MSMg01no514_g10.g1 PHD_FILE: MSMg01no514_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,717,004 - 27,717,626)(27,548,583 - 27,549,229)
sequence
NACCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGTCTACCGGCGGCTGCAACTACTGCTGCCTTTGTAAAACCA
CATTGCTGGGCTTAGAGGTGAGCTTCTACTGATCCATGTGAAACATTCTT
CCCATGGTATCTAGAACATGGAGAGAGATGAAAGAAGGAATCAATGTCCT
AAGGGAAAAGTAAAGTCACTTTTGTGACCCAGGGGACACTCCATGTGAGA
ACAGGTGCCAGGAAGACTTAGTTTAGCTTTCAGGAACACCACCAAGGGCT
ACTTAGGTAAAAGAAGTCAGATATAAAAACTGACTAATGCAGTCTTTGCT
GCATCCATCAGTTTTCACAGTACACCTGACCTCTATTCAGACCCATGGCA
GCTTCAAAGATGAAGGCAGTACCAAGAATAGTTTCTGTTACAGCCAAAAA
TCACATGGGTAGTCATTTATGAAAGTCCACCACTCCCAGTTGGTCCCATT
TGGCACTAATGCAATCCTAGGGGAAGCAGAAAAACTAAACAGTATTATTA
GCAATGACAGAAAGCTTTTAGCCTGGCTCCCCTGTACCATGATGGATGCT
GTTTATCATATTTTACCTGTTGCTTTTAAACTTTCCTTGTCAGAATGAAT
CATGGCTAAGGGGAAGGGGACCAGATTATAGACAATGCGATTTGTCTAAT
CGCAGT

CATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAGAATTAGAAAGGATCTATCTGTGCT
GGCCTTGAACATAAGTGGTACCCTCAGCTGCCTCCTAGAGCCATCTCCAA
GGTAGCAAGGAGGGAGGACACCAGCAAATTTCTACAAAGATAAGACTGGA
AGGTGGGAAATGATTTCTGAATGGAAGATGAGTGTGACTATTCCATACAT
TCCATGGAGAAGTTGTTGATAATATGATGCTATATGGTTCTTAGCCTTTC
TCTGTATCTCTCCATCTGTCTCTGTCTTTATCTCTCTGTCTCTCTTTGTC
TCTGTCTTTGTCTCTCTCTCTGTATATCTCTCTGTCTCTCTGTGTGTCTC
TCTTTGTCTCTCTGCCTCTCTTTGTCTCTGTCTCTTTCTGTCTCTGTCTC
TCTGTGTCTCTGTGTCTCTGTGTCTTTGCCTCTCTCTCTCTGTATCTCTG
TCTCTCTGTCTTTCTCTGTATCACTTTGTCTCTGTCTCTTTCTGCCACTT
TCTGTCTCTGTCTCTGTGTCTTTGTCACTCTGTCTCTCTGTTGTTCTCTG
TCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTGTGTCTCTCTGTTGCTC
TCTGTCTCTTTATCAGTTTCTCTCTCTGTCTCTCTCTCTCTCTGTCTCTC
TCTCCCTGTCTCTCTGTCTCTGTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_g10.b1 MSMg01no514_g10.b1 CHROMAT_FILE:
MSMg01no514_g10.b1 PHD_FILE: MSMg01no514_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:17 2005
         (627 letters)



>mm_chr12_27716800_27717826
          Length = 1027

 Score = 1189 bits (615), Expect = 0.0
 Identities = 621/623 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtctaccggcggctgcaactactgctgcctttgtaaaaccacattgctggg 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gaattctctgtctaagggcggctgcaactactgctgcctttgtaaaaccacattgctggg 768

                                                                       
Query: 65  cttagaggtgagcttctactgatccatgtgaaacattcttcccatggtatctagaacatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 cttagaggtgagcttctactgatccatgtgaaacattcttcccatggtatctagaacatg 708

                                                                       
Query: 125 gagagagatgaaagaaggaatcaatgtcctaagggaaaagtaaagtcacttttgtgaccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gagagagatgaaagaaggaatcaatgtcctaagggaaaagtaaagtcacttttgtgaccc 648

                                                                       
Query: 185 aggggacactccatgtgagaacaggtgccaggaagacttagtttagctttcaggaacacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aggggacactccatgtgagaacaggtgccaggaagacttagtttagctttcaggaacacc 588

                                                                       
Query: 245 accaagggctacttaggtaaaagaagtcagatataaaaactgactaatgcagtctttgct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 accaagggctacttaggtaaaagaagtcagatataaaaactgactaatgcagtctttgct 528

                                                                       
Query: 305 gcatccatcagttttcacagtacacctgacctctattcagacccatggcagcttcaaaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gcatccatcagttttcacagtacacctgacctctattcagacccatggcagcttcaaaga 468

                                                                       
Query: 365 tgaaggcagtaccaagaatagtttctgttacagccaaaaatcacatgggtagtcatttat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tgaaggcagtaccaagaatagtttctgttacagccaaaaatcacatgggtagtcatttat 408

                                                                       
Query: 425 gaaagtccaccactcccagttggtcccatttggcactaatgcaatcctaggggaagcaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaaagtccaccactcccagttggtcccatttggcactaatgcaatcctaggggaagcaga 348

                                                                       
Query: 485 aaaactaaacagtattattagcaatgacagaaagcttttagcctggctcccctgtaccat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aaaactaaacagtattattagcaatgacagaaagcttttagcctggctcccctgtaccat 288

                                                                       
Query: 545 gatggatgctgtttatcatattttacctgttgcttttaaactttccttgtcagaatgaat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gatggatgctgtttatcatattttacctgttgcttttaaactttccttgtcagaatgaat 228

                                  
Query: 605 catggctaaggggaaggggacca 627
           |||||||||||||||||||||||
Sbjct: 227 catggctaaggggaaggggacca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no514_g10.g1 MSMg01no514_g10.g1 CHROMAT_FILE:
MSMg01no514_g10.g1 PHD_FILE: MSMg01no514_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:17 2005
         (647 letters)



>mm_chr12_27548383_27549429
          Length = 1047

 Score = 1251 bits (647), Expect = 0.0
 Identities = 647/647 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagaattagaaaggatctatctgtgctggccttgaacataagtggtaccctcagctgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagaattagaaaggatctatctgtgctggccttgaacataagtggtaccctcagctgcc 260

                                                                       
Query: 61  tcctagagccatctccaaggtagcaaggagggaggacaccagcaaatttctacaaagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctagagccatctccaaggtagcaaggagggaggacaccagcaaatttctacaaagata 320

                                                                       
Query: 121 agactggaaggtgggaaatgatttctgaatggaagatgagtgtgactattccatacattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agactggaaggtgggaaatgatttctgaatggaagatgagtgtgactattccatacattc 380

                                                                       
Query: 181 catggagaagttgttgataatatgatgctatatggttcttagcctttctctgtatctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catggagaagttgttgataatatgatgctatatggttcttagcctttctctgtatctctc 440

                                                                       
Query: 241 catctgtctctgtctttatctctctgtctctctttgtctctgtctttgtctctctctctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catctgtctctgtctttatctctctgtctctctttgtctctgtctttgtctctctctctg 500

                                                                       
Query: 301 tatatctctctgtctctctgtgtgtctctctttgtctctctgcctctctttgtctctgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatatctctctgtctctctgtgtgtctctctttgtctctctgcctctctttgtctctgtc 560

                                                                       
Query: 361 tctttctgtctctgtctctctgtgtctctgtgtctctgtgtctttgcctctctctctctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctttctgtctctgtctctctgtgtctctgtgtctctgtgtctttgcctctctctctctg 620

                                                                       
Query: 421 tatctctgtctctctgtctttctctgtatcactttgtctctgtctctttctgccactttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatctctgtctctctgtctttctctgtatcactttgtctctgtctctttctgccactttc 680

                                                                       
Query: 481 tgtctctgtctctgtgtctttgtcactctgtctctctgttgttctctgtctctctgtctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtctctgtctctgtgtctttgtcactctgtctctctgttgttctctgtctctctgtctc 740

                                                                       
Query: 541 tctctgtctctctctgtctctgtgtctctctgttgctctctgtctctttatcagtttctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctctgtctctctctgtctctgtgtctctctgttgctctctgtctctttatcagtttctc 800

                                                          
Query: 601 tctctgtctctctctctctctgtctctctctccctgtctctctgtct 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctctgtctctctctctctctgtctctctctccctgtctctctgtct 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 209
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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