Query= MSMg01no514_l08.b1 MSMg01no514_l08.b1 CHROMAT_FILE:
MSMg01no514_l08.b1 PHD_FILE: MSMg01no514_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:42 2005
(706 letters)
>mm_chr12_86648918_86650023
Length = 1106
Score = 1336 bits (691), Expect = 0.0
Identities = 700/703 (99%)
Strand = Plus / Plus
Query: 4 ggaattctctatctttgtgctcaccagaagcagcacggaagctgtacaaggtagcaatac 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctatctctgtgctcaccagaagcagcacggaagctgtacaaggtagcaatac 263
Query: 64 ctacacctggccccagagatcctgattaaactagtcaagggcagtgcaggactaaggttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctacacctggccccagagatcctgattaaactagtcaagggcagtgcaggactaaggttt 323
Query: 124 ataaaagccatgcttttatcatgcatttcaaagtactctgtatgcaaaaagcatttggaa 183
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 324 ataaaagccatgcttttatcatgaatttcaaagtactctgtatgcaaaaagcatttggaa 383
Query: 184 attttcttttaaaagaattactaaacgtttctcaagaaaacacaaatgtagacataacat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attttcttttaaaagaattactaaacgtttctcaagaaaacacaaatgtagacataacat 443
Query: 244 tattaaatgggaataatagattctatgatgcagatgtatgctgggggaagagctcaaaac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tattaaatgggaataatagattctatgatgcagatgtatgctgggggaagagctcaaaac 503
Query: 304 tgttccattttaaaaaggtccaaacagatggtggtggaacaggcctgcaacccctcaact 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgttccattttaaaaaggtccaaacagatggtggtggaacaggcctgcaacccctcaact 563
Query: 364 caggaggtggaagcaggttaggaactcaaggttgctcctggcactaagcactgagtctga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caggaggtggaagcaggttaggaactcaaggttgctcctggcactaagcactgagtctga 623
Query: 424 ggctagactgagttataaaacagtccaacagagaagaaacggtggatgactagctgggaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggctagactgagttataaaacagtccaacagagaagaaacggtggatgactagctgggaa 683
Query: 484 atgacaatgttcagtttctgccactctgcatgacatctttatctagtacaagacttgagg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atgacaatgttcagtttctgccactctgcatgacatctttatctagtacaagacttgagg 743
Query: 544 aagcagcccctgcttcagagtagcacatccagcagtgtcaccacagtgccttaggtgaga 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aagcagcccctgcttcagagtagcacatccagcagtgtcaccacagtgccttaggtgaga 803
Query: 604 gtcaatctggtctaagccaccccaactccacagagatgaaacccttaccaacaataagaa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gtcaatctggtctaagccaccccaactccacagagatgaaacccttaccaacaataagaa 863
Query: 664 tggtgtgccagccacggcaagaaaggtctgggacatgatgcag 706
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 864 tggtgtgccagccacggcaagaaaggtctggaacatgatgcag 906
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no514_l08.g1 MSMg01no514_l08.g1 CHROMAT_FILE:
MSMg01no514_l08.g1 PHD_FILE: MSMg01no514_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:42 2005
(631 letters)
>mm_chr12_86705728_86706758
Length = 1031
Score = 1023 bits (529), Expect = 0.0
Identities = 572/587 (97%), Gaps = 4/587 (0%)
Strand = Plus / Minus
Query: 1 agcatgcactgctttcaaaggacttgagtttgtttcctagcaccctactgtgtggtttac 60
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 agcatgcactactttcaaagaacttgagtttgtttcctagcaccctactgtgtggtttac 952
Query: 61 aacctcctgtaactgtagttctggagacacctgcacctctacacagacatacataattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 aacctcctgtaactgtagttctggagacacctgcacctctacacagacatacataattaa 892
Query: 121 aaataaaaataaattttacaaaagaaaagaaagatcagccgggcagtggtggtgcacccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 aaataaaaataaattttacaaaagaaaagaaagatcagccgggcagtggtggtgcacccc 832
Query: 181 tttagtcccagcactcaggaggcagaggcaggcagatttctgagttcgaggctagcctgg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 831 tttagtcccagcactcaggaggcagaggcaggcagatttctgagttcgaggccaggctgg 772
Query: 241 tctacagagtgaggtccaggacagccagggctacacagagaaatcctgtctctaaaaaac 300
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 771 tctacagagtgagttccaggacagccagggctatacagagaaatcctgtctctaaaaaac 712
Query: 301 aaaacaaaacaaaaaaaaa-a-acccagacagaaagaaaggaaagaaagatcaataaatt 358
|||||||||||||||| || | || ||||||||||||||||||||||||||||||||||
Sbjct: 711 aaaacaaaacaaaaaacaacagac--agacagaaagaaaggaaagaaagatcaataaatt 654
Query: 359 ctgttagtgttctctgttagatacagtggcaacttgtggtttatatgtttctttgtgcag 418
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 653 ctgttagtgttctccgttagatacagtggcaacttgtggtttatatgtttctttgtgtag 594
Query: 419 gaagttgaactagatggtctagaatactctacctaactgcacccccaccaccactcccaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gaagttgaactagatggtctagaatactctacctaactgcacccccaccaccactcccaa 534
Query: 479 cttaagatgatagcctaagctaggctcagaattgctatgtagctggagataactcttctg 538
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 533 cttaagatgatagcctaagctaggctcagaattgctatgtagctggaggtaactcttctg 474
Query: 539 ttcttcctctctgtttcccaaatgttagaattgtggatatagattac 585
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 473 ttcttcctctctgtttcccaaatgttagaattgtgggtatagattac 427
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
