Query= MSMg01no514_m24.b1 MSMg01no514_m24.b1 CHROMAT_FILE:
MSMg01no514_m24.b1 PHD_FILE: MSMg01no514_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:50 2005
(567 letters)
>mm_chr12_56483880_56484846
Length = 967
Score = 905 bits (468), Expect = 0.0
Identities = 480/484 (99%), Gaps = 1/484 (0%)
Strand = Plus / Plus
Query: 82 tgaccactagaatagtttgttaccagggagccctcggggatactcagctggatagactga 141
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 283 tgaccactagaatagtttgttaccagggagccctcggg-atactcagctggatagactga 341
Query: 142 ggctttgggctttttccttaaggcagcgtctcactttacagccctggctggccagaaact 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggctttgggctttttccttaaggcagcgtctcactttacagccctggctggccagaaact 401
Query: 202 cactatgtagagcacgctgacccccagctcttttcctacctctgcatcccaagccctgag 261
||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct: 402 cactatgtagagcacgctggcctccaactcttttcctacctctgcatcccaagccctgag 461
Query: 262 gtaagggtgtgcgataccacgcctgtataaagggtttaaggtggttttgttggtgatggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gtaagggtgtgcgataccacgcctgtataaagggtttaaggtggttttgttggtgatggt 521
Query: 322 gatagttttatgcttgttgagaaggataccaaggggtgtctcgcagtgcgtacctctctg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gatagttttatgcttgttgagaaggataccaaggggtgtctcgcagtgcgtacctctctg 581
Query: 382 gtgaggagcttgcagcccttcatttgcctgaactgggtcccaagtgctgggttgtaggca 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gtgaggagcttgcagcccttcatttgcctgaactgggtcccaagtgctgggttgtaggca 641
Query: 442 tgagtcgccatgcccacttagatggaattattaaaattgccatgaaaggggctggggaga 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tgagtcgccatgcccacttagatggaattattaaaattgccatgaaaggggctggggaga 701
Query: 502 tggctcagttggcaaagtgctctccaaggaccggaggacctgaagttgatcccagtcctc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tggctcagttggcaaagtgctctccaaggaccggaggacctgaagttgatcccagtcctc 761
Query: 562 ccat 565
||||
Sbjct: 762 ccat 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_m24.g1 MSMg01no514_m24.g1 CHROMAT_FILE:
MSMg01no514_m24.g1 PHD_FILE: MSMg01no514_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:50 2005
(560 letters)
>mm_chr12_56601671_56602630
Length = 960
Score = 617 bits (319), Expect = 0.0
Identities = 325/327 (99%), Gaps = 2/327 (0%)
Strand = Plus / Minus
Query: 1 atgatgtccctgaaggttgcagctcactggatgttctagcccagggaataagataaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atgatgtccctgaaggttgcagctcactggatgttctagcccagggaataagataaaatg 267
Query: 61 tgtatcagaaacattagtatcactgtataattgtaactttttgtaccacctaattaatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgtatcagaaacattagtatcactgtataattgtaactttttgtaccacctaattaatca 207
Query: 121 attaaatttaaggcagggtctcagacatcccgaacctggcctccaattcactctgcagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 attaaatttaaggcagggtctcagacatcccgaacctggcctccaattcactctgcagat 147
Query: 181 gaagacggtcctgaatctgtgattatcttgcttctatagac-catgtgctgggttatata 239
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 146 gaagacggtcctgaatctgtgattatcttgcttctatag-cgcatgtgctgggttatata 88
Query: 240 cctctgtgccgtcacagctgactttattccatactggagatcaaccccaggaattcagtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 cctctgtgccgtcacagctgactttattccatactggagatcaaccccaggaattcagtt 28
Query: 300 tttaaaccactaactgattctttaaat 326
|||||||||||||||||||||||||||
Sbjct: 27 tttaaaccactaactgattctttaaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
