Query= MSMg01no515_d09.b1 MSMg01no515_d09.b1 CHROMAT_FILE:
MSMg01no515_d09.b1 PHD_FILE: MSMg01no515_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:26 2005
(591 letters)
>mm_chr12_104240762_104241753
Length = 992
Score = 1046 bits (541), Expect = 0.0
Identities = 575/587 (97%), Gaps = 3/587 (0%)
Strand = Plus / Plus
Query: 6 gaattc-agatttgatttcttggactcctgagtgccgggactgtgtgtgcgtgccactat 64
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaagatttgaagtcttggactcctgagtgccgggactgtgtgtgcgtgccactat 265
Query: 65 acctgacttttatagatataattctgcaggctttgaagacatgaaagcaaagagaagaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acctgacttttatagatataattctgcaggctttgaagacatgaaagcaaagagaagaga 325
Query: 125 agtctgagatgtagctcctatgatcacggcctctaaagcattcttaggaagtggaccgtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agtctgagatgtagctcctatgatcacggcctctaaagcattcttaggaagtggaccgtg 385
Query: 185 aattaacctatgtttcagggaataatctgaaaaaaatgtgatggctttagaattcaacaa 244
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 386 gattaacctatgtttcagggaataatctgaaaaaaatatgatggctttagaattcaacaa 445
Query: 245 atctcagaaaagctcagctctgccactggcgagctgtgtgaacttaagacagatgactta 304
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 446 atctcagcaaagctcagctctgccactggcgagctgtatgaacttaagacagatgactta 505
Query: 305 atctttgatatttgcctgtaaaataataatcatagctgcctcaggcatagtaattgtagc 364
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atctttgatttttgcctgtaaaataataatcatagctgcctcaggcatagtaattgtagc 565
Query: 365 agcaccttgaggtgaaggtttagcctgggacactggtaggtgccacctgaggacctggca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agcaccttgaggtgaaggtttagcctgggacactggtaggtgccacctgaggacctggca 625
Query: 425 cgcagtgggtcttacttatttctccgcacatctttttttttttttttttttttttaattt 484
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 626 cgcagtgggtcttacttatttttccgcacatctttttttttttttttttttta--aattt 683
Query: 485 taaagataggtacatagtgttttcctatgtaccctgggtggtcaagtactatgtcactca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taaagataggtacatagtgttttcctatgtaccctgggtggtcaagtactatgtcactca 743
Query: 545 tggctatcctcctgcctcagcctcctcaatactgggattggatgtct 591
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tggctatcctcctgcctcagcctcctcaatactgggattggatgtct 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 992
Length adjustment: 10
Effective length of query: 581
Effective length of database: 982
Effective search space: 570542
Effective search space used: 570542
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_d09.g1 MSMg01no515_d09.g1 CHROMAT_FILE:
MSMg01no515_d09.g1 PHD_FILE: MSMg01no515_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:26 2005
(603 letters)
>mm_chr12_104402890_104403892
Length = 1003
Score = 1093 bits (565), Expect = 0.0
Identities = 593/603 (98%), Gaps = 3/603 (0%)
Strand = Plus / Minus
Query: 1 acctcactgacgtactgccgtatgcactccattgctgccgtcccacactgaaacacaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 acctcactgacgtactgccgtatgcactccattgctgccgtcccacactgaaacacaggg 938
Query: 61 acacagctcagtcacggcgccacttctcatgccaccacagactcactgtgaagctgtcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 acacagctcagtcacggcgccacttctcatgccaccacagactcactgtgaagctgtcta 878
Query: 121 tgtctctgttacctcacccccactgctaccttcagtacaaaactggttaaaaacaacaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 tgtctctgttacctcacccccactgctaccttcagtacaaaactggttaaaaacaacaac 818
Query: 181 aacaacaacaacaacaaggtttgtgctagagagcaaagagacaggaaagcctgaaagaaa 240
|||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 817 aacaacaaca--aa-aaggtttgtgctagagagcaaagagacaggaaagcctgcaagaaa 761
Query: 241 ggaaagtaaatgctacttccaccagataattgaagtgacgcttccttgcttttaaaccgg 300
||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 760 ggaaagtaattgctacttccaccagctaattgaagtgacgcctccttgcttttaaaccgg 701
Query: 301 tgtaagcacaagagtcagatctaactgattcatcccaggctccagggaagtctcgaagtc 360
| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 700 tataagcacaagagtcagacctaactgatccatcccaggctccagggaagtctcgaagtc 641
Query: 361 tcagatgcctgtgagatgagcgctctcaagttttacactaccttagtcatctctacccgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tcagatgcctgtgagatgagcgctctcaagttttacactaccttagtcatctctacccgg 581
Query: 421 ccccccgaacacacacaggtattatattgtgtttgcagggtcaaaagttgttttcaaatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ccccccgaacacacacaggtattatattgtgtttgcagggtcaaaagttgttttcaaatc 521
Query: 481 aagcacggtttgacttcacatgcacagatgtgttgaggtagaatcaatcgtgtgctcatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aagcacggtttgacttcacatgcacagatgtgttgaggtagaatcaatcgtgtgctcatt 461
Query: 541 ttgagttctttctagaccaggtaactagaagaagggagatggactccctcatacacttca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttgagttctttctagaccaggtaactagaagaagggagatggactccctcatacacttca 401
Query: 601 agt 603
|||
Sbjct: 400 agt 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
