Query= MSMg01no515_g02.b1 MSMg01no515_g02.b1 CHROMAT_FILE:
MSMg01no515_g02.b1 PHD_FILE: MSMg01no515_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:40 2005
(704 letters)
>mm_chr12_89819924_89821027
Length = 1104
Score = 1295 bits (670), Expect = 0.0
Identities = 694/702 (98%)
Strand = Plus / Minus
Query: 1 atccaatttattcagtacatgcagaatgcagaaaaaacatcagaaaccataccaagaact 60
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 721 atccaatttattcagtacatgcagaacgcagaaagaacatcagaaaccataccaagaact 662
Query: 61 gggcattcaaacatgaggtccttgccttcaagaagcttataacctagcaaaggagacaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gggcattcaaacatgaggtccttgccttcaagaagcttataacctagcaaaggagacaac 602
Query: 121 catgcaaagtggcatccgctaaaatagagatattcccagagatcatttagggaaggaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 catgcaaagtggcatccgctaaaatagagatattcccagagatcatttagggaaggaact 542
Query: 181 gactacgtatacaataatgtaaggaagtgatgcccaagcaggtttgatgaatggtgagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gactacgtatacaataatgtaaggaagtgatgcccaagcaggtttgatgaatggtgagag 482
Query: 241 ggagaaaaatgtgtgctgtgcaaagacatgaggaagcatggtgtgttccaaggagaacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggagaaaaatgtgtgctgtgcaaagacatgaggaagcatggtgtgttccaaggagaacag 422
Query: 301 tgaccggtgagcaaaggaaaaatgagaagatcatgtactatctcctaggtagtgcctaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgaccggtgagcaaaggaaaaatgagaagatcatgtactatctcctaggtagtgcctaac 362
Query: 361 aatgtaattcacagtctgctcacagcgggttgctatatcagtttcatttctcagtgctgt 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 361 aatgtaattcacagtctgctcacagcgggttgctgtatcagtttcatttctcagtgctgt 302
Query: 421 gaccaaatgcctgacaggaagcttgatttggttcacagttcaagggtacagttcacagtt 480
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 301 gaccaaatgcctgacaggaagcttgctttggttcacagttcaagggtacagttctcagtt 242
Query: 481 ccatcatgatgaggaagtcatagaaatcagagcttgaggcagctggtcagattgcatatt 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcatcatgatgaggaagtcatagaaatcagagcttgaggcagctggtcagattgcatatt 182
Query: 541 caatcaagaagcagagagcaacggatattggagtttggtatctatctcccctatattcag 600
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 181 caatcaagaagcagagagcaatggatattggggtttggtatctatctcccctatattcag 122
Query: 601 tttggtacccgagaccgtagcataacttactgacaggctgggtcttacaacctcactcta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttggtacccgagaccgtagcataacttactgacaggctgggtcttacaacctcactcta 62
Query: 661 ggaaatgttcacagacaatgcctacagtcactgtgccccccc 702
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggaaatgttcacagacaatgcctacagtcactgtgccccccc 20
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no515_g02.g1 MSMg01no515_g02.g1 CHROMAT_FILE:
MSMg01no515_g02.g1 PHD_FILE: MSMg01no515_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:40 2005
(692 letters)
>mm_chr12_89676468_89677559
Length = 1092
Score = 1210 bits (626), Expect = 0.0
Identities = 679/701 (96%), Gaps = 9/701 (1%)
Strand = Plus / Plus
Query: 1 tgtgaaggtttggggttatggattaatgaactaattagctactagcaatgaatattaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tgtgaaggtttggggttatggattaatgaactaattagctactagcaatgaatattaata 251
Query: 61 aagtgtctgcctttgtgatggatggcatagagtactaatggtgaccaatagcattaggat 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aagtgtctgcctttgtgatgaatggcatagagtactaatggtgaccaatagcattaggat 311
Query: 121 tgactaattatatgaatgattagtgatggaaaaacctttaaaatacctttcagtatgctt 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 312 tgactaattatatgaatgattagtgatggaaaaacctttaaaataccttttagtatgctt 371
Query: 181 ggatattaaggataattaaaaatttcataaatagcatgaactatagaaaacagtgagtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggatattaaggataattaaaaatttcataaatagcatgaactatagaaaacagtgagtaa 431
Query: 241 cgactgcttggtcagcagctcccccagcacaggcctgtgtaggctcccataggccaccct 300
|||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 432 cgactgcttgataagcagctcccccagcacagacctgtgtaggctcccataggccaccct 491
Query: 301 atgtagacccaggtttggcccaagatgtcaagtgccaattgtataagtaagggaactcat 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 492 atgtagacccaggtttggcccaagatgtcaagtgccgattgtataagtaagggaactcat 551
Query: 361 ggactgctctcctgggcctctcctgagccctttctcctgagcgtctagacctgagcataa 420
|| |||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct: 552 gggctgctctcctgggcctctcctgagccctttttcctgagcatctagacctgagcaaaa 611
Query: 421 agccttaaaggtttttgtt-gtttg-tt-------tggttggttggttttctttggtttt 471
||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 612 agccttaaaggtttttgtttgtttggttggttggttggttggttggttttctttggtttt 671
Query: 472 ggtttgttttggtttttgtctgaacttggactcagagagaggaattcagcccctttcaat 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ggtttgttttggtttttgtctgaacttggactcagagagaggaattcagcccctttcaat 731
Query: 532 ggtcctgaggcccccaggctgggcttagtcatgtgacagccacttttatttttttgttca 591
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 732 ggtcctgaggcccccaggctgggcttagtcgtgtgacagccacttttatttttttgttca 791
Query: 592 cttgctctgtccctacttcagtggcagctgagggtcatctgaggatacctgataagatgc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 792 cttgctctgtccctacttcagtggcagctgagggtcatctgaggatacctgatgagatgc 851
Query: 652 agtttacgtangctgttctgtccaggtgcctggatctgatg 692
|||||||||| ||||||||||||||||||||||||||||||
Sbjct: 852 agtttacgtaggctgttctgtccaggtgcctggatctgatg 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
