Query= MSMg01no515_o07.b1 MSMg01no515_o07.b1 CHROMAT_FILE:
MSMg01no515_o07.b1 PHD_FILE: MSMg01no515_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:24 2005
(273 letters)
>mm_chr12_49114660_49115332
Length = 673
Score = 487 bits (252), Expect = e-142
Identities = 269/276 (97%), Gaps = 3/276 (1%)
Strand = Plus / Plus
Query: 1 attctttcctttcctatgttgccttggtcatgatatcacttcataacaatataacagtga 60
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctttccttttgtatgttgccttggtcatgatatcacttcataacaatataacagtga 260
Query: 61 ctaaggaacatacctaaatataatggtaaattggtaatatacaacattattgggaaggta 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ctaaggaacatacctaaagataatggtaaattggtaatatacaacattattgggagggta 320
Query: 121 atatagaacattattgatttttcagggatctaacacaatattttaaagtgttgctaacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatagaacattattgatttttcagggatctaacacaatattttaaagtgttgctaacag 380
Query: 181 atggattcttgtgttcttcaatttcttgcccaatctattccttcttcatattcaatgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggattcttgtgttcttcaatttcttgcccaatctattccttcttcatattcaatgctt 440
Query: 241 cctcctcctcctcctcctcctcctc---attctcct 273
||||||||||||||||||||||||| ||||||||
Sbjct: 441 cctcctcctcctcctcctcctcctcctcattctcct 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no515_o07.g1 MSMg01no515_o07.g1 CHROMAT_FILE:
MSMg01no515_o07.g1 PHD_FILE: MSMg01no515_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:24 2005
(664 letters)
>mm_chr12_49268538_49269601
Length = 1064
Score = 1201 bits (621), Expect = 0.0
Identities = 651/661 (98%)
Strand = Plus / Minus
Query: 4 aaaacaacaactaacaaacactgattaaatgttaacttaggtgtaaatctcttctgtgga 63
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 776 aaaacaacaactaacaaacactgattaaatgttaacttcggtgtaaatctcttctgtgga 717
Query: 64 aaagaataagttcttcttaagggatcctaactaagaaggatcatgattaagcaaatattt 123
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 716 aaagaataagttcttcataagggatcctaactaagaaggatcgtgattaagcaaatattt 657
Query: 124 atttcaaactaattatcaataagagagagagaggcagtaagataagtcttaaaatatgtt 183
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 656 atttcaaactaattatcaataagagagagagaagcagtaagatatgtcttaaaatatgtt 597
Query: 184 ataaaatgggtagatgaaattaagaaatatatcaatgtgttatagttcaagaaaagttat 243
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ataaaatggatggatgaaattaagaaatatatcaatgtgttatagttcaagaaaagttat 537
Query: 244 agtaatgaaatgctatttaaaaatagatatcatttatgtctgattaggttgttatgtagt 303
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 536 agtaatgaaatgctatttaaaaataaatatcatttatgtctgattaggttgttatgtagt 477
Query: 304 agtattacaattctttgagaaaatagaaaattggactagacattaaaaactgaaagttcc 363
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 agtattacaattctatgagaaaatagaaaattggactagacattaaaaactgaaagttcc 417
Query: 364 aatgcaaaaactagccacataagtcaaatggaaataaaaacaaaagaaaaagttttaaac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aatgcaaaaactagccacataagtcaaatggaaataaaaacaaaagaaaaagttttaaac 357
Query: 424 aacaaaattaatgcatatatagtaaaagatatggaataaattgaatcaaatcaatagtta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aacaaaattaatgcatatatagtaaaagatatggaataaattgaatcaaatcaatagtta 297
Query: 484 caaataaagtagctggtaaagttaaatgtcttcatgtggtagttatataccacatatcca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 caaataaagtagctggtaaagttaaatgtcttcatgtggtagttatataccacatatcca 237
Query: 544 aaacaagccaaattcaaatataatgaaagttataccaaggagcgaacaagcagagaccct 603
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 236 aaacaagccaaattcaaatataatgaaagttataccaaggagcaaacaagcagagaccct 177
Query: 604 gggctccagatacataggtagcagaggatggaggatggccttgtctgacatcagtgggag 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gggctccagatacataggtagcagaggatggaggatggccttgtctgacatcagtgggag 117
Query: 664 g 664
|
Sbjct: 116 g 116
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
