Query= MSMg01no516_o14.b1 MSMg01no516_o14.b1 CHROMAT_FILE:
MSMg01no516_o14.b1 PHD_FILE: MSMg01no516_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:49 2005
(691 letters)
>mm_chr12_48746002_48747098
Length = 1097
Score = 1116 bits (577), Expect = 0.0
Identities = 649/697 (93%), Gaps = 45/697 (6%)
Strand = Plus / Plus
Query: 4 ggaattcatgcctatcttcaagaatctctgttttctgttttgtttgtttgttt------t 57
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 204 ggaattcatgcctatcttcaagaatctctgttttctgttttgtttgtttgtttgtttgtt 263
Query: 58 tttttgatgacaacaattaaaagaacctgtttattagaaaatttatggatttgatgacag 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttttgatgacaacaattaaaagaacctgtttattagaaaatttatggatttgatgacag 323
Query: 118 aggtcttaggcaaatggcatgtataatagcaaatgtagtggaggtgacgttaaaacatca 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggtcttaggcaaatggcatgtataatagcaaatgtagtggaggtgacgttaaaacatca 383
Query: 178 ccatttactttataactattaatttgactttaaattttctccaacttcctcttttacctc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccatttactttataactattaatttgactttaaattttctccaacttcctcttttacctc 443
Query: 238 agacatttggttaaggctcacagtgcaccacatccatacttggatctctggaacccacat 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agacatttggttaaggctcacagtgcaccacatccatacttggatctctggaacccacat 503
Query: 298 atgttgaatttaggataagtttatgtccatttttcagctcaatataatgaaatttgagac 357
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 504 atgttgaatttaggataagtttatgtccatttttcagctcaatataatggaatttgagac 563
Query: 358 ccacttccctctaattgaatctctcttagtcagtaataagtgtaccataataagtgtatg 417
|||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 564 ccacttccctctaattgaatctctcttagtcagtaataagtgtaccataa---g------ 614
Query: 418 ataagtgtaccataataagtgtaccataataagtg--tatgataagggaagagaaacctc 475
||| || || | | | |||||||||||||||||| ||
Sbjct: 615 ---------cca--at-------cc-------g-gcttctgataagggaagagaaacttc 648
Query: 476 ttccttttacccagtgtgagcccactgttgtgaagcaataggcaccaaaattcataagct 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttccttttacccagtgtgagcccactgttgtgaagcaataggcaccaaaattcataagct 708
Query: 536 acaaacttgatcctagaaaaagctacccagacaagagtcaccaaagtagccttgttaaat 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 acaaacttgatcctagaaaaagctacccagacaagagtcaccaaagtagccttgttaaat 768
Query: 596 gttggtgattggtagctttgacacctcaatgcacatacttcttgatatttgtgttcaaac 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gttggtgattggtagctttgacacctcaatgcacatacttcttgatatttgtgttcaaac 828
Query: 656 atagtttatatctaagatatatatata--aaggattc 690
||||||||||||||||||||||||||| ||||||||
Sbjct: 829 atagtttatatctaagatatatatatataaaggattc 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1097
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1087
Effective search space: 740247
Effective search space used: 740247
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_o14.g1 MSMg01no516_o14.g1 CHROMAT_FILE:
MSMg01no516_o14.g1 PHD_FILE: MSMg01no516_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:49 2005
(669 letters)
>mm_chr12_48904939_48906007
Length = 1069
Score = 1042 bits (539), Expect = 0.0
Identities = 634/671 (94%), Gaps = 13/671 (1%)
Strand = Plus / Plus
Query: 1 aattctcagcagccacattgtggctcactaccatttgtaaaaaaaaaaaaaaaaaaggca 60
||||| ||||||||| | |||||||||||||||||| |||||||||| ||||
Sbjct: 210 aattcccagcagccataatgtggctcactaccatttataaaaaaaaa---------ggca 260
Query: 61 -ttaatctcttttggtgtgtctaagtatatttcatataaatattttaattatatgtaaaa 119
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attac-ctcttttggtgtgtctaagtatatttcatataaatattttaattatatgtaaaa 319
Query: 120 catttattatggcttctaaggatctaaaaataataatgataaaaattgaaaacatgcaag 179
|||||||||||||||||||||| |||||||| |||||||||| |||||||| ||||||||
Sbjct: 320 catttattatggcttctaaggacctaaaaatgataatgataagaattgaaagcatgcaag 379
Query: 180 tacagtaagcaaaagaataaatttaataatgatgtaagttttttattaccaatattcttg 239
| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 380 tgcagtaagcaaaagaataaatttaataacgatgtaagttttt-attaccaatattcttg 438
Query: 240 gatattcacaaagtataacatcaatccttagaccaacatattgttgacaacaccaaaaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 439 gatattcacaaagtataacatcaatccttagaccaacatattgttgacaacaccaaacat 498
Query: 300 tcaaataatatgtcttagctatagaagttatttttatttaaaacttacttattgctttaa 359
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcaaacaataagtcttagctatagaagttatttttatttaaaacttacttattgctttaa 558
Query: 360 aaattacaggatggtatgtataatataaacttttcagtatgcttattatggtaagactaa 419
||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 559 aaattacaggatggtatttataatataaactttacagtatgcttattatgctaagactaa 618
Query: 420 caagtaaaattagaaaaatatgtattagatcccttttt-gtgtaatggtagattggatgt 478
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 619 caagtaaaattagaaaaatatgtattagatcccttttttgtgtaatggtagattggatgt 678
Query: 479 accttcaatcacagagtctgatctagataacagatgttaaaatgctgattaattagatgg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 679 accttcaatcacagagtctgatctagataacagatgttaaaatgctgattaattagacgg 738
Query: 539 atttttagatcatgtttgggtcctcagagtccatttctattgtgtcactgggtagacaat 598
||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 739 attttcagatcatgtttgggtcctcagcgtccatttctattgtgtcactgggaagacaat 798
Query: 599 gaacaacataggtttattaaaacaatatcctttaattattaatctggatgaatagcacag 658
||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 799 gaacaacataggtttgttaaaacaatatcctttaatgataaatctggatgaatagcacag 858
Query: 659 caagcatttgc 669
|||||||||||
Sbjct: 859 caagcatttgc 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
