Query= MSMg01no517_a24.b1 MSMg01no517_a24.b1 CHROMAT_FILE:
MSMg01no517_a24.b1 PHD_FILE: MSMg01no517_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:01 2005
(688 letters)
>mm_chr12_104106816_104107905
Length = 1090
Score = 1282 bits (663), Expect = 0.0
Identities = 676/681 (99%), Gaps = 2/681 (0%)
Strand = Plus / Minus
Query: 10 ggaattcttttgccttactctcctaagtgctggaattaactatgtgtgcttgattagata 69
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 ggaattcttttgccatagtctcctaagtgctggaattaactatgtgtgcttgattagata 899
Query: 70 tttcacttagaaaatgtggatcgtgggaccagagagatggctcagttaaaagcaagtaca 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 tttcacttagaaaatgtggatcgtgggaccagagagatggctcagttaaaagcaagtaca 839
Query: 130 gaggaccacagtttgtttcccagcaaccacatcagacagcttattaccacctgtaactct 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 gaggaccacagtttgtttcccagcaaccacatcagacagcttattaccacctgtaactct 779
Query: 190 agttcctcagaccctatgccctcttctggtctctgcaggcacccacattcacatgcacag 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 agttcctcagaccctatgccctcttctggtctctgcaggcacccacattcacatgcacag 719
Query: 250 atacacacatatacatcatttaaaaataaaataaatcttggggaaaaaaagaagtcattt 309
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 atacacacatatatatcatttaaaaataaaataaatcttggggaaaaaaagaagtcattt 659
Query: 310 gtttgtctctttttaaaaaagaaaatatggtcttatcctgtcatagtctcttatgaaagg 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gtttgtctctttttaaaaaagaaaatatggtcttatcctgtcatagtctcttatgaaagg 599
Query: 370 atcaatattgaattgaacttttatagtgctattctttccttttttaagtgagaaac--at 427
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 598 atcaatattgaattgaacttttatagtgctattctttccttttttaagtgagaaacatat 539
Query: 428 gccagaactaacttcaaatatattgtatgtgcatgtgtgtgtccatgtgtctgcacacat 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gccagaactaacttcaaatatattgtatgtgcatgtgtgtgtccatgtgtctgcacacat 479
Query: 488 gcatgtgtatgaagcccagaggacagcttcagatgttgctccgtaggaatcatctccctt 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gcatgtgtatgaagcccagaggacagcttcagatgttgctccgtaggaatcatctccctt 419
Query: 548 gttttttgagagagtctttcatcaattgagatcttagcagatagggtagattaattggcc 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gttttttgagagagtctttcatcaattgagatcttagcagatagggtagattaattggcc 359
Query: 608 atccagtgtagagcatgtgcctatctctgcttctttggtgctgaaattacaagcacacct 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atccagtgtagagcatgtgcctatctctgcttctttggtgctgaaattacaagcacacct 299
Query: 668 ggctttaaaaaaaaaaaaaaa 688
|||||||||||||||||||||
Sbjct: 298 ggctttaaaaaaaaaaaaaaa 278
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1090
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1080
Effective search space: 732240
Effective search space used: 732240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_a24.g1 MSMg01no517_a24.g1 CHROMAT_FILE:
MSMg01no517_a24.g1 PHD_FILE: MSMg01no517_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:01 2005
(546 letters)
>mm_chr12_103941434_103942379
Length = 946
Score = 1048 bits (542), Expect = 0.0
Identities = 545/546 (99%)
Strand = Plus / Plus
Query: 1 tgggctgcactgaacgccctgccgaccgtgaaaagcctgctttctcctaagaggcctgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggctgcactgaacgccctgccgaccgtgaaaagcctgctttctcctaagaggcctgtc 260
Query: 61 tgggagactcagccaaacccacaagggaactataaggggcgcagaaccagggccccctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggagactcagccaaacccacaagggaactataaggggcgcagaaccagggccccctta 320
Query: 121 taaataggcattatcccatccagttgtggtcaaggagggcctgtaaggcttgcctggggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaataggcattatcccatccagttgtggtcaaggagggcctgtaaggcttgcctggggc 380
Query: 181 agagaagcagcaggctcttggacagccatgaggggcaaggcagtgctgccagggcggcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagaagcagcaggctcttggacagccatgaggggcaaggcagtgctgccagggcggcct 440
Query: 241 ctatgtgccagctcagactgctaactaacccctgtgcaccaagggataatggaagcccaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatgtgccagctcagactgctaactaacccctgtgcaccaagggataatggaagcccaa 500
Query: 301 ctgttcaattctccaaaattcggggcacccaccagggatggaactacaagtgaagtccat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgttcaattctccaaaattcggggcacccaccagggatggaactacaagtgaagtccat 560
Query: 361 tttcaaaagtcaaatctactaagtgaaaagactacttaacaaaaggtttccacccggagt 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 tttcaaaagtcaaatctactaagtgaaaagactacctaacaaaaggtttccacccggagt 620
Query: 421 ttgcaaaaggcttcggggatggggtgtgggggctggattctcttaggctttcattgagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgcaaaaggcttcggggatggggtgtgggggctggattctcttaggctttcattgagaa 680
Query: 481 gctgtaaccaatagctctgcggagaggcaaggcacacctgactctaggaacccagcactt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctgtaaccaatagctctgcggagaggcaaggcacacctgactctaggaacccagcactt 740
Query: 541 ctgtaa 546
||||||
Sbjct: 741 ctgtaa 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
