Query= MSMg01no517_l08.b1 MSMg01no517_l08.b1 CHROMAT_FILE:
MSMg01no517_l08.b1 PHD_FILE: MSMg01no517_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:53 2005
(689 letters)
>mm_chr12_120235457_120236544
Length = 1088
Score = 1176 bits (608), Expect = 0.0
Identities = 623/628 (99%), Gaps = 1/628 (0%)
Strand = Plus / Minus
Query: 62 gaaagttttctcctatttagaggtaactctgataatgattaaagcagaactgatgtagca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 gaaagttttctcctatttagaggtaactctgataatgattaaagcagaactgatgtagca 1029
Query: 122 tttgcctagtgccagcaccgtggatgagtttattctttaatccccacacccaagccttct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 tttgcctagtgccagcaccgtggatgagtttattctttaatccccacacccaagccttct 969
Query: 182 tatcttcttttacagataatgaaagggagtcttagagatattcattagcttatgggactc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 tatcttcttttacagataatgaaagggagtcttagagatattcattagcttatgggactc 909
Query: 242 acaaaagtggtagaaccaggcactgttttagtatctgaatctacaaagattcatggcaca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 acaaaagtggtagaaccaggcactgttttagtatctgaatctacaaagattcatggcaca 849
Query: 302 aaaatatataatgaaaagctaagtgtacagactgaagcaaacatcagacatgtaaatgca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaatatataatgaaaagctaagtgtacagactgaagcaaacatcagacatgtaaatgca 789
Query: 362 ccctggcaaccatttgactagatctgtaataaatattcatacacagagaggcacatagtg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ccctggcaaccatttgactagatctgtaataaatattcatacacagagaggcacatagtg 729
Query: 422 aaagattatagaagaatgtctcctaacattcaaacctgaattgattcacaaaggctaagc 481
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 728 aaagattatagaagaatgtctcctaagattcaaacct-aattgattcacaaaggctaagc 670
Query: 482 atgatgcttagacagtagaataaattaagaggaaagattatttcagatccataaaacaac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 atgatgcttagacagtagaataaattaagaggaaagattatttcagatccataaaacaac 610
Query: 542 tgaaaggagcaaaggcaaacttgaatgtagtttttatcagtttgtaccatttctccagtt 601
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgaaaggagcaaaggcaagctggaatgtagtttttatcagtttgtaccatttctccagtt 550
Query: 602 acttacaagtgagtcagaaacttggtgccttatagtaacagtcatattgctcataaagct 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 acttacaagtgagtcagaaacttggtgccttatagtaacagtcatattgctcataaagct 490
Query: 662 gcaatttggatgaggtcagcataactgt 689
||||||||||||| ||||||||||||||
Sbjct: 489 gcaatttggatgaagtcagcataactgt 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1088
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1078
Effective search space: 731962
Effective search space used: 731962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_l08.g1 MSMg01no517_l08.g1 CHROMAT_FILE:
MSMg01no517_l08.g1 PHD_FILE: MSMg01no517_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:53 2005
(557 letters)
>mm_chr12_120074699_120075655
Length = 957
Score = 1069 bits (553), Expect = 0.0
Identities = 556/557 (99%)
Strand = Plus / Plus
Query: 1 cggacataagaatcagcacctcacttttcaaaagaagccaagatccgtgagggagctttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cggacataagaatcagcacctcacttttcaaaagaagccaagatccgtgagggagctttg 260
Query: 61 gccacagtgggcttagctattgcccaggcagggaaagtccgctacaatctgacccggcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccacagtgggcttagctattgcccaggcagggaaagtccgctacaatctgacccggcgg 320
Query: 121 cgaccccgcgctcgcacccgcctccaggacatcgctcagagcaggtgtcaggtgggcggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgaccccgcgctcgcacccgcctccaggacatcgctcagagcaggtgtcaggtgggcggc 380
Query: 181 ccggggagcgacgggcccctcccgcggccgcgcgtgcctgcctcagccccctcccgcccc 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ccggggagcgacgggcccctcccgcggccgcgcgtgccagcctcagccccctcccgcccc 440
Query: 241 tccagcccctttgtccgccccgagggcggccccttcccgcccgcagggtgtgcaagctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagcccctttgtccgccccgagggcggccccttcccgcccgcagggtgtgcaagctct 500
Query: 301 ccgggggagggcgcggaggagggtcggggaggagctgggaggatcagggcgggcagctaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccgggggagggcgcggaggagggtcggggaggagctgggaggatcagggcgggcagctaa 560
Query: 361 gcttaggggtgggagccgcagcgcacccgcagaggagccgctcggtgacccgcgctgcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttaggggtgggagccgcagcgcacccgcagaggagccgctcggtgacccgcgctgcaa 620
Query: 421 cccgtgcgcagccgccgtcccggggcgcgctggtgactcccctttggcgagagcagacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccgtgcgcagccgccgtcccggggcgcgctggtgactcccctttggcgagagcagacac 680
Query: 481 ggccctcagccccggagcctgaggctaccgtgtctgtacagcaaggcgggggagctcggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggccctcagccccggagcctgaggctaccgtgtctgtacagcaaggcgggggagctcggc 740
Query: 541 taagcggatgggagggc 557
|||||||||||||||||
Sbjct: 741 taagcggatgggagggc 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
