BAC Information

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BAC

Clone NameMSMg01-517O10
Chromosome12 (Build37)
Map Location 56,097,556 - 56,098,188
singlet/doubletsinglet
Overlap genenone
Upstream geneNpas3, Egln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a
Downstream geneLOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517O10.T7 (MSMg01no517_o10.b1)MSMg01-517O10.TJ (MSMg01no517_o10.g1)
ACCAG589537AG589538
length743749
length of high quality
(start - end)
701 (39 - 739)626 (70 - 695)
definitionCHROMAT_FILE: MSMg01no517_o10.b1 PHD_FILE: MSMg01no517_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:08 2005CHROMAT_FILE: MSMg01no517_o10.g1 PHD_FILE: MSMg01no517_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCC
CTGGTATGATCACCTAATGGTTGGCAGTCCCCGCCTTTGCACCTTCCAGC
TCCCACTATGTACTTAAAAAAAAAAAAAAAAAAAAAAAGGAGTGCTTCAT
GAGTTTCCGAGTCATCCTTGTGCAGGGCCATGCTATTTTCCTCCACATGC
TTCCAATGTTAGCATACGTGCTGCTGAGGTGAGCACCCCCACTATCCCTT
TTTTCTTTTTCCAGTATCAGGGAGTGAACTTAGAGCCTCGAACATGCTAA
GCAAGCCAGTGTCCCACTGCAGAGGTATACTTCAGCCCACAAGGCTCCCT
GGCAGCCTCCAGAGGAGAATCCGTTAGCCTTACAACTTTTTGGGATATCC
GTTCCTTCTAGCTCTGGTGCACTCTGCTGCTATCAGAAGTTGTTAGAAAC
TCCGAGAGGCAGCTCTTCCGGGTTGTTACCCTCTTTTTTTTCTGGAGCCA
AAGTGGATGATTCTTCTGGCTGGCACTTTCCTGGGGAAGAACACCACCAG
AGAGCAAGAATCTTCTGATTTCTCGGATGGCCTCAGGTGCCTGTGATGTG
TTCACGTGATGCGCCAATGCCTTCAGAAATAGTTATCAAATGGACACATG
CTGTGGGACCTTGGGCAGTTTTTGTTTTCCTTGTTTTTGTTTTTAGAGAT
GGAATCTTTGGAGTCTAGGCTGCTCCCCAATCCACCAATCAGC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACAGAGATCAATCAGCCTCCCCAGTTCTGGG
ATTAACTGTGTGCATCACTATGTCTGGCCTAAGGGGGGTGTATTGACTGG
TTTTGTGTGTCAACTTCACACAGGCTGGAGTTATCTTGGAGAAAGGAGCT
TCAGTTGGGGAAATGCCTCCGCGAGATCCAGCTGTAAGGCATTTTCTCAA
TTAGTGATCAAGAGGGAAGGGCCCCTTGTGGGTGGGACCATCTCTAGGCT
GGTAGTCTTGTGTTCTATAAGGGAGCAGGCTGAGCAAACCAGGGGAGGCA
AGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTCCCT
GCCCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAACAGCAGTATG
GAAGTGTAAGCCGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCAT
GATGTTTGTCCAGGAATAGAAACCCTGACTAAGACAGGGGGGTTTAAATA
TTTCTTTAATTGAAAGTGGTTGTTCGCGCCGGGCGTGGTGGCGCACGCCT
TTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGG
CCAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTATACAGAGA
AACCCTGTCTCGAAAAACCCNNNNNNAAAAAAAAAAAAAAAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_o10.b1 MSMg01no517_o10.b1 CHROMAT_FILE:
MSMg01no517_o10.b1 PHD_FILE: MSMg01no517_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:08 2005
         (701 letters)



>mm_chr12_56097088_56098188
          Length = 1101

 Score = 1174 bits (607), Expect = 0.0
 Identities = 628/637 (98%), Gaps = 4/637 (0%)
 Strand = Plus / Minus

                                                                        
Query: 65   ccactatgtacttaaaaaaaaaaaaaaaaaaaaaaaggagtgcttcatgagtttccgagt 124
            |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 ccactatgtactt----aaaaaaaaaaaaaaaaaaaggagtgcttcatgagtttccgagt 1046

                                                                        
Query: 125  catccttgtgcagggccatgctattttcctccacatgcttccaatgttagcatacgtgct 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 catccttgtgcagggccatgctattttcctccacatgcttccaatgttagcatacgtgct 986

                                                                        
Query: 185  gctgaggtgagcacccccactatcccttttttctttttccagtatcagggagtgaactta 244
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985  gctgaggcgagcacccccactatcccttttttctttttccagtatcagggagtgaactta 926

                                                                        
Query: 245  gagcctcgaacatgctaagcaagccagtgtcccactgcagaggtatacttcagcccacaa 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925  gagcctcgaacatgctaagcaagccagtgtcccactgcagaggtatacttcagcccacaa 866

                                                                        
Query: 305  ggctccctggcagcctccagaggagaatccgttagccttacaactttttgggatatccgt 364
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 865  ggctccctggcagcctccagaggagaatcagttagccttacaactttttgggatatccgt 806

                                                                        
Query: 365  tccttctagctctggtgcactctgctgctatcagaagttgttagaaactccgagaggcag 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805  tccttctagctctggtgcactctgctgctatcagaagttgttagaaactccgagaggcag 746

                                                                        
Query: 425  ctcttccgggttgttaccctcttttttttctggagccaaagtggatgattcttctggctg 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745  ctcttccgggttgttaccctcttttttttctggagccaaagtggatgattcttctggctg 686

                                                                        
Query: 485  gcactttcctggggaagaacaccaccagagagcaagaatcttctgatttctcggatggcc 544
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 685  gcactttcctggggaagaacacaaccagagagcaagaatcttctgatttctcggatggcc 626

                                                                        
Query: 545  tcaggtgcctgtgatgtgttcacgtgatgcgccaatgccttcagaaatagttatcaaatg 604
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 625  tcaggtgcctgtgatgtgttcacgtgatgcaccaatgccttcagaaatagttatcaaacg 566

                                                                        
Query: 605  gacacatgctgtgggaccttgggcagtttttgttttccttgtttttgtttttagagatgg 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565  gacacatgctgtgggaccttgggcagtttttgttttccttgtttttgtttttagagatgg 506

                                                 
Query: 665  aatctttggagtctaggctgctccccaatccaccaat 701
            |||||||||||||||||||||||||||||||||||||
Sbjct: 505  aatctttggagtctaggctgctccccaatccaccaat 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)