Query= MSMg01no518_c11.b1 MSMg01no518_c11.b1 CHROMAT_FILE:
MSMg01no518_c11.b1 PHD_FILE: MSMg01no518_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:28 2005
(482 letters)
>mm_chr12_100244871_100245753
Length = 883
Score = 851 bits (440), Expect = 0.0
Identities = 469/480 (97%), Gaps = 6/480 (1%)
Strand = Plus / Minus
Query: 5 gaattcctttaaataaaacttctgtatgtattttatagagttcaaaatacttccaaacat 64
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 517 gaattcctttaaataaaacttctgtatgtattttatagagtttaaaatacttccaaacat 458
Query: 65 ggaggttagctaatatcaagcttt-aaaaaaaaaaaatcagtacatctcttcaggtatcc 123
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 457 ggaggttagttaatatcaagctttaaaaaaaaaaaaatcagtacatctcttcaggtatcc 398
Query: 124 cattgcaaatataaacaaggtctgatttataactcttttgtgtaaaacataatataacca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cattgcaaatataaacaaggtctgatttataactcttttgtgtaaaacataatataacca 338
Query: 184 catttttacttacgtgtacatgtgctgagaagatggtttggtcagtaaagtactttctgt 243
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 catttttacttatgtgtacatgtgctgagaagatggtttggtcagtaaagtactttctgt 278
Query: 244 tcaggcaggaagacttaaatttacacccccagcacggaagcagaagccaagtgttatagc 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 277 tcaggcaggaagacttaaatttacacccccagcacagaagcagaagccaagtgttatagc 218
Query: 304 atgttcctaggtagcagagacaggaggatcctggagcttgctggccagctggtcttaaca 363
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 217 atgttcctaggtagcagagacaggaggatactggagcttgctggccagctggtcttaaca 158
Query: 364 aattggtgagaccagattcagtgagagatacagtctattgaaaaagaagagaagaaggag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 aattggtgagaccagattcagtgagagatacagtctattgaaaaagaagagaagaaggag 98
Query: 424 gaggaagagga---ggaggaggaggaggaga-gaaggaggaggaaaaggagagaaggagg 479
||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 97 gaggaagaggataaggaggaggaggag-agaagaaggaggaggaaaaggagagaaggagg 39
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 883
Length adjustment: 10
Effective length of query: 472
Effective length of database: 873
Effective search space: 412056
Effective search space used: 412056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_c11.g1 MSMg01no518_c11.g1 CHROMAT_FILE:
MSMg01no518_c11.g1 PHD_FILE: MSMg01no518_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:28 2005
(571 letters)
>mm_chr12_100100913_100101883
Length = 971
Score = 1089 bits (563), Expect = 0.0
Identities = 569/571 (99%)
Strand = Plus / Plus
Query: 1 aagaataatttttggtaaaaatttcatgctaaaaaaataaatgtaacaggacaataattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaataatttttggtaaaaatttcatgctaaaaaaataaatgtaacaggacaataattt 260
Query: 61 ttgaattggcaaaataaaatgcttcaccagttaatatatactctaaaatattaactggta 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaattggcaaaataaaatccttcaccagttaatatatactctaaaatattaactggta 320
Query: 121 taatttattcagatgaggtagaaacatagtatctttcatgagaggattagttaaaatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatttattcagatgaggtagaaacatagtatctttcatgagaggattagttaaaatatt 380
Query: 181 aggagaaaagataccttttctcaaacatgggtatcggaataattttacaactccgtagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagaaaagataccttttctcaaacatgggtatcggaataattttacaactccgtagtc 440
Query: 241 atcagctgtaactaaaacctggccaacataattgccatcgactgagtttatatcattgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcagctgtaactaaaacctggccaacataattgccatcgactgagtttatatcattgat 500
Query: 301 atcagaatacttgggccaaattccattgacttcaaggcctgcaacgcatgtccaggaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcagaatacttgggccaaattccattgacttcaaggcctgcaacgcatgtccaggaagc 560
Query: 361 ccagtgcatgccttttatttcttctttgcttgtcacctcctttcctcctaaaagtaaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagtgcatgccttttatttcttctttgcttgtcacctcctttcctcctaaaagtaaaag 620
Query: 421 agtcttcagttaagaaattactccactcgattcttttcactcaaatataaacctttatac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtcttcagttaagaaattactccactcgattcttttcactcaaatataaacctttatac 680
Query: 481 cttacacctaagttagagaagactacacgaacatacagttaagtgtggattagaacaggc 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 cttacacctaagttagagaagactacacgaacatacagttaaatgtggattagaacaggc 740
Query: 541 aaaggggaggaggagggcagatgtggggtgg 571
|||||||||||||||||||||||||||||||
Sbjct: 741 aaaggggaggaggagggcagatgtggggtgg 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
