BAC Information

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BAC

Clone NameMSMg01-518F14
Chromosome12 (Build37)
Map Location 116,635,684 - 116,636,306
singlet/doubletsinglet
Overlap geneIgh
Upstream geneEG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544
Downstream geneEG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518F14.T7 (MSMg01no518_f14.b1)MSMg01-518F14.TJ (MSMg01no518_f14.g1)
ACCAG589879AG589880
length768767
length of high quality
(start - end)
212 (48 - 259)623 (77 - 699)
definitionCHROMAT_FILE: MSMg01no518_f14.b1 PHD_FILE: MSMg01no518_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:43 2005CHROMAT_FILE: MSMg01no518_f14.g1 PHD_FILE: MSMg01no518_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:44 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCC
ATCACTGGAAAGAGAGGCCCATTGGACACACAAACTGTATATGCTCTAGT
ACAGGGGAACGCCAGGGCCAAAAAAATGGGAATGGGTGGGTAGGGAAGTG
AGGGGAGGGTATGGGGGACTTTTGGGATAGCATTGNAAAGGTAATTGAGG
AAATTACGTAATAAGAAATATTATACATTAAAAAAAGAAAATCTGTAAGA
TTAAGCCTTAAACTATTCTGATAATTTGAAAACTTGGACTTTATATAAAT
GGAATATTTTTCTATTTTTATGCAACTGTTCTCCAACAATTTTGTTTGGA
CAAGGTTGCTTTAAGCGTTAACTTTCTGGTGAACATTATAATTCTATTTT
CTTTCAACAGAAAAAAACCACTTCTGTAGCCATGATATATAGCTAACCTT
AAGTGAGACTCTAGTATTGGAATGACGTACTATTAGAAATAAATTTTCTG
CCAATACCCCTTCGAATTCTCCTTTTTTTATTTGTATTTTTGCTTTCTAC
TGCTATTCATCCCCTCATTTGCAACTCGTTCTTTTCATTCCTTTATTAGA
TTTCCCTGTAGAAACCTATTCCTTCCTTTTCATTCATACTCTTTCCTGGC
TGTAATTCTGCTGTCCTTTTTCTTTTTTTCTAATTTTGCTTGTTTTCTTC
CCCTTTTTATTTTTGTTA
NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTATTGAGTAGTTGGTATGGAA
AGAACTATGTATTCTCTGTGATTGTCTTTTTTGAGTCTATTAACTTGACT
TGTACCTGTTGTGATTCAGATATAATGATTTTTTTTCAAACTCAGTGAAG
ATTCCTTGTTAAGCTCTTCAAGAAATTATATTTTCTGTTTATTTGATTTT
GTATATTTTTGAAAAAAAAGTAATAAATGTATTCACATAACTGAATCCCT
CCCCAAATTTATGACATCTATTTTCTCATAAAATCAACTATACAGCTTTT
TATTCTCTCTGGAAAAAGGAAAATATGGAATGAAAATTAAAGAGGGATTA
AAAACATTTCAATAAACTAGAAATATACACATGTGCGCACACACACAAAG
AGACACACTCAAACACAAATGAAAACCCATAAAACTATACCTTTGCAAAC
ATAATATGTAGACAAATAACAAGTTGAAAAACCACACAAACTGATATGAG
AATAGATATCTACAACAATATTGTTGAGTTCATTTTGTGTTGGCCTTCTT
TTGTAGGACATGTGTCTATCCTTAAGCATGGTTAGTAAATCCAATAATTC
TTCATTGGAGAAAGCTAATTTTTCCTTTGCATGTGAGGGTCAATTTCAGA
AACTTCTTGTTTAAAGGTGAGAACTTGTGGCCGTGNTCTTCTCTCAACAC
TGGGTTTCCATTTGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_f14.g1 MSMg01no518_f14.g1 CHROMAT_FILE:
MSMg01no518_f14.g1 PHD_FILE: MSMg01no518_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:44 2005
         (623 letters)



>mm_chr12_116635484_116636506
          Length = 1023

 Score = 1098 bits (568), Expect = 0.0
 Identities = 610/624 (97%), Gaps = 2/624 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtattgagtagttggtatggaaagaactatgtattctctgtgattgtcttttttgagt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtattgaatagttggtatggaaagaactatgtattctctgtgattgtcttttttgagt 260

                                                                       
Query: 61  ctattaacttgacttgtacctgttgtgattcagatataatgattttttttcaaactcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ctattaacttgacttgtacctgttgtgattcagatataatgattttttttcaaactctgt 320

                                                                       
Query: 121 gaagattccttgttaagctcttcaagaaattatattttctgtttatttgattttgtatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagattccttgttaagctcttcaagaaattatattttctgtttatttgattttgtatat 380

                                                                       
Query: 181 ttttgaaaaaaaagtaataaa-tgtattcacataactgaatccctccccaaatttatgac 239
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgaaaaaaa-gtaataaaatgtattcacataactgaatccctccccaaatttatgac 439

                                                                       
Query: 240 atctattttctcataaaatcaactatacagctttttattctctctggaaaaaggaaaata 299
           ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 440 atctattttctcataaaatcaactatacaactttttattctcgctggaaaaaggaaaata 499

                                                                       
Query: 300 tggaatgaaaattaaagagggattaaaaacatttcaataaactagaaatatacacatgtg 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 500 tggaatgaaaattaaagagggattaaaaacatttcaataaactagaaatatacacatgcg 559

                                                                       
Query: 360 cgcacacacacaaagagacacactcaaacacaaatgaaaacccataaaactatacctttg 419
           | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 560 cacacacacacaaagagacacactcaaacaaaaatgaaaacccataaaactatacctttg 619

                                                                       
Query: 420 caaacataatatgtagacaaataacaagttgaaaaaccacacaaactgatatgagaatag 479
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caaacataatatgtagacaaacaacaagttgaaaaaccacacaaactgatatgagaatag 679

                                                                       
Query: 480 atatctacaacaatattgttgagttcattttgtgttggccttcttttgtaggacatgtgt 539
           ||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||
Sbjct: 680 atatctacaacaatattgttgagttcattttgtgttggccttcctttgcgggacatgtgt 739

                                                                       
Query: 540 ctatccttaagcatggttagtaaatccaataattcttcattggagaaagctaatttttcc 599
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 740 ctatccttaagcatggttagtaaatccaataaatcttcattggagaaagctaatttttcc 799

                                   
Query: 600 tttgcatgtgagggtcaatttcag 623
           ||||||||||||||||||||||||
Sbjct: 800 tttgcatgtgagggtcaatttcag 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)