Query= MSMg01no518_i07.b1 MSMg01no518_i07.b1 CHROMAT_FILE:
MSMg01no518_i07.b1 PHD_FILE: MSMg01no518_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:56 2005
(663 letters)
>mm_chr12_36168119_36169181
Length = 1063
Score = 1241 bits (642), Expect = 0.0
Identities = 653/660 (98%), Gaps = 7/660 (1%)
Strand = Plus / Plus
Query: 5 gaattcaggacttctggaagaacagccagtgctcttaacctctgagccatctctccagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggacttctggaagaacagccagtgctcttaacctctgagccatctctccagca 264
Query: 65 catgaatcagtgttttaatcagtttcatgctacaattaaatacctcagttgattaactga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgaatcagtgttttaatcagtttcatgctacaattaaatacctcagttgattaactga 324
Query: 125 aaaaaagagaaaaggcttgtgttatgaaggttctggaagaaaactaaggagccatgttgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaaagagaaaaggcttgtgttatgaaggttctggaagaaaactaaggagccatgttgc 384
Query: 185 tttaagcctctggtgagagagttgaacaataagttcaggagcacgtgtcatgcaaagtca 244
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 tttaagcctctggtgagagagttgaa------gttcaggagcacgtgtcatgcaaagtca 438
Query: 245 agcagagacaggattgtctgggattccagtgtccttgggaacatgcttctactgaccaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agcagagacaggattgtctgggattccagtgtccttgggaacatgcttctactgaccaaa 498
Query: 305 aggccttccagtagatctcattttttcaaagtcccaccctttgaggacacacatttaaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aggccttccagtagatctcattttttcaaagtcccaccctttgaggacacacatttaaca 558
Query: 365 acaaacagttggaaacattcttcaaattcagacataacaataaataagcatttctgagtc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acaaacagttggaaacattcttcaaattcagacataacaataaataagcatttctgagtc 618
Query: 425 cattacaacagacttggctctggaacagccatcagtatcacagtcatagccattgtgcac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cattacaacagacttggctctggaacagccatcagtatcacagtcatagccattgtgcac 678
Query: 485 agctgttaaatgggcatgccagctggaatttctaatctattttgccaaatggaaaccatc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agctgttaaatgggcatgccagctggaatttctaatctattttgccaaatggaaaccatc 738
Query: 545 tatctgtgattttactcaacaaggagacctcgggcaataatgccatgtctttgcatagct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tatctgtgattttactcaacaaggagacctcgggcaataatgccatgtctttgcatagct 798
Query: 605 ggcattggttgtcaatcttttgatggtttgatcttaggataaaaaacaaaa-caaaaacc 663
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 799 ggcattggttgtcaatcttttgatggtttgatcttaggataaaaaacaaaaacaaaaacc 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_i07.g1 MSMg01no518_i07.g1 CHROMAT_FILE:
MSMg01no518_i07.g1 PHD_FILE: MSMg01no518_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:56 2005
(667 letters)
>mm_chr12_36319704_36320766
Length = 1063
Score = 774 bits (400), Expect = 0.0
Identities = 552/666 (82%), Gaps = 101/666 (15%)
Strand = Plus / Minus
Query: 4 tgaataacagagcatagtctgggcttcagtgggttctttagacaa--------------- 48
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgaataacagagcatagtctgggcttcagtgggttctttagacaaataaataaataaata 526
Query: 49 ---aaa-aaa-aaataaagcaatgcaagacccacagatgaaccttttagcacttgtagtt 103
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aataaataaataaataaagcaatgcaagacccacagatgaaccttttagcacttgtagtt 466
Query: 104 atggcatgctggggactggtaacatacccttacaacttggctcatcctggagatccatga 163
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 465 atggcatgctggggattggtaacatacccttacaacttggctcatcctggagat-catga 407
Query: 164 ggacatcgtaatttctaaacctaatgttttaatatccacgcaaagagactaagttatgca 223
|||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 406 ggacatcgtaatttgtaagcc---tgttttaatatccacgcaaagagactaagttatgca 350
Query: 224 gttgaatgtagggaaaggctgtatataatactaatatctacttacttgagcatgaagtag 283
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 349 gttgaatgtagggaaaggctatgtataatactaatatctacttacttgagcatgaagtag 290
Query: 284 catttatgtagttaacacctaatttgtcatcagagtataaatataaatataaatataaat 343
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 289 catttatgtagttgacacctaatttgtcatcagagtataaatat---------------- 246
Query: 344 ataaatataaatataaatataaatataaatataaatataaatataaatataaatataaat 403
Sbjct: 246 ------------------------------------------------------------ 246
Query: 404 ataaatagcagtgccaagactcctttgcaaggtagcaggcacttaaccaaggtgagtttt 463
|| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 -tacacagtagtgccaagactcctttgcaaggtagcaggcacttaaccaaggtgagtttt 187
Query: 464 attttgaactgaggttggaggtgtttgctttgctctttcagtgtatgtcccaaataaaaa 523
|||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||
Sbjct: 186 attttgaactgaggttggaggtatttggtttgctctttcagcgtatgtcccaaataaaaa 127
Query: 524 ctataaataattgaatgtatagcaggcatctgctttgcctgaaacaatggaaaaatgaga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ctataaataattgaatgtatagcaggcatctgctttgcctgaaacaatggaaaaatgaga 67
Query: 584 tcttgcagaatgtcaggtacagttccttcagctatgctatacgattcatgaggaaacacc 643
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 66 tcttgcagaatgtcaggtacagttccttcagctatgctatacgattaatgaggaaacacc 7
Query: 644 aggaag 649
||||||
Sbjct: 6 aggaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1063
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1053
Effective search space: 691821
Effective search space used: 691821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
