BAC Information

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BAC

Clone NameMSMg01-518J05
Chromosome12 (Build37)
Map Location 7,793,933 - 7,794,413
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668380
Downstream geneEG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518J05.T7 (MSMg01no518_j05.b1)MSMg01-518J05.TJ (MSMg01no518_j05.g1)
ACCAG590052AG590053
length768771
length of high quality
(start - end)		675 (49 - 723)619 (77 - 695)
definitionCHROMAT_FILE: MSMg01no518_j05.b1 PHD_FILE: MSMg01no518_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:01 2005CHROMAT_FILE: MSMg01no518_j05.g1 PHD_FILE: MSMg01no518_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAACCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGCACATACTGAAACATAATAAGAAACAACATATAGCAGA
CCAACAGCCAACGTCAAATGAAATGGAGAGTAACTTGAAGCAATAGCACT
AAAATCAGTGACAAGACAAAACTGCCCCCTCTCTCAATATTTATTCGATA
TAGTACTCGAAGTTCTACTAGAGGAATTAGAGAACAAAAGGAGGTCAAAG
GGGTATCAAATGCAAAAGAAGAAATCAGAATATCACTATTTGCAGGATGA
TATGATAGTATACATAAGAGACCCCAAAAATTCTACCAGAGAACTCCAAC
AGCTGATAAACAGCTTCAGCAAAGTGACTGGATATAAAATTAACTCAAAC
AAATCAGTAGTCTTCCTTTATACAAAGGATAAATGGGCTGAGAAAGAAAT
GAGGAAAACAATACACTTCACAAAAGTCACAAATAATATAAAATACCTTG
GTGTAACTTTAACCAAGCAAGTGACAAGAACCAATCTGTATAACAAGGAC
TTCAAGTCTCTGAAAAAAGAAATCAAAGAAGACACCAGAAGATGGAAAGA
TCTCCCATGCTCATGGATAGGTAGAATTAAATGGTAAAAATGATCATCTT
ACTAAAAGCAAACTACAGATTCAATGTAATCCACATTAAAATATCAACTC
TATACTTCACAGACATGGAAAGAGCAATTCTCAATTTCATATGGACAAAC
AATCAAAACCCCGGAGAG

NCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACTGAAAAGGATTGGTAAGGAGA
ATGAAGAAGAGAGAGACCGGAGATGACCTTTAGTTCTTATAATGAAAATT
CCTTGTCCTTGGAGTACATGAGGTCCATTTGTCAACAGAGTGTACCTGAA
AATATGATTGCTTAAGAAGCCTTTTGTAGGGGCTGGTGAGATGGCTCAGG
GGTTAAGAGCGCCGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGC
AACCACATGGTGGCTCACAACCATCTGTAATGAAATCAGATGCCTCTTCT
GGAGTGTCTGAAGACAACTACAGCGTACTTACATATGATAAATAAATAAA
TATTAAAAAAAGAAGCCTTTTGTATAAAAGAGTCTGAGAAATGAACATCC
TCAAGGGACTGAATTATGGGCAGGTTTATCATATCTCCTTGTCTATAATA
AGAAAAGAAAGGCCCATAGAGCATTCAAGGACCTTTAATGGAATAAAAAC
ATAACAGGCCTTTGTCTGAGAAACCTGAGTTATGATTATATTTTTCCCTA
ATAGATCTCAGACATTTCTATTCTTTCTGAACATGATCTCTTCCTGGAGT
GCCCTGTACAGCCTATAGTAGTTTGCATCCTGTCCATCTTGAAATGCCCA
GAGTACGCTTTCTAAGATGTCTTCTTTAATATTTTACAGGAAATAATGTG
TTCATTCTATCAGCTCCTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_j05.g1 MSMg01no518_j05.g1 CHROMAT_FILE:
MSMg01no518_j05.g1 PHD_FILE: MSMg01no518_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:01 2005
         (619 letters)



>mm_chr12_7793395_7794413
          Length = 1019

 Score =  907 bits (469), Expect = 0.0
 Identities = 478/481 (99%)
 Strand = Plus / Minus

                                                                        
Query: 139  agaagccttttgtaggggctggtgagatggctcaggggttaagagcgccgactgctcttc 198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 agaagccttttgtaggggctggtgagatggctcaggggttaagagcgccgactgctcttc 960

                                                                        
Query: 199  caaaggtcctgagttcaaatcccagcaaccacatggtggctcacaaccatctgtaatgaa 258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959  caaaggtcctgagttcaaatcccagcaaccacatggtggctcacaaccatctgtaatgaa 900

                                                                        
Query: 259  atcagatgcctcttctggagtgtctgaagacaactacagcgtacttacatatgataaata 318
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 899  atcagatgcctcttctggagtgtctgaagacaactacagtgtacttacatatgataaata 840

                                                                        
Query: 319  aataaatattaaaaaaagaagccttttgtataaaagagtctgagaaatgaacatcctcaa 378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839  aataaatattaaaaaaagaagccttttgtataaaagagtctgagaaatgaacatcctcaa 780

                                                                        
Query: 379  gggactgaattatgggcaggtttatcatatctccttgtctataataagaaaagaaaggcc 438
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779  gggcctgaattatgggcaggtttatcatatctccttgtctataataagaaaagaaaggcc 720

                                                                        
Query: 439  catagagcattcaaggacctttaatggaataaaaacataacaggcctttgtctgagaaac 498
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 719  catagagcattcaaggacctttaatagaataaaaacataacaggcctttgtctgagaaac 660

                                                                        
Query: 499  ctgagttatgattatatttttccctaatagatctcagacatttctattctttctgaacat 558
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659  ctgagttatgattatatttttccctaatagatctcagacatttctattctttctgaacat 600

                                                                        
Query: 559  gatctcttcctggagtgccctgtacagcctatagtagtttgcatcctgtccatcttgaaa 618
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599  gatctcttcctggagtgccctgtacagcctatagtagtttgcatcctgtccatcttgaaa 540

             
Query: 619  t 619
            |
Sbjct: 539  t 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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