Query= MSMg01no518_k09.b1 MSMg01no518_k09.b1 CHROMAT_FILE:
MSMg01no518_k09.b1 PHD_FILE: MSMg01no518_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:07 2005
(603 letters)
>mm_chr12_104150299_104151297
Length = 999
Score = 1060 bits (548), Expect = 0.0
Identities = 590/608 (97%), Gaps = 10/608 (1%)
Strand = Plus / Plus
Query: 1 gtggtgcataactgcaatcccagctacaggaggattataaatttgaggctcatctgggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gtggtgcataactgcaatcccagctacaggaggattataaatttgaggctcatctgggca 256
Query: 61 acatagcaagatcctggtcaaaagactaaacagagcctggagagatagctcagtggataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 acatagcaagatcctggtcaaaagactaaacagagcctggagagatagctcagtggataa 316
Query: 121 agccagacaggtgtggtagggtcccgtcagtcctaagacctgggagacaatgacagggcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agccagacaggtgtggtagggtcccgtcagtcctaagacctgggagacaatgacagggcg 376
Query: 181 atacctagggcaagctgtctaggttgactagctggaattggcaagctctgggctcacaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atacctagggcaagctgtctaggttgactagctggaattggcaagctctgggctcacaag 436
Query: 241 agaccctgcctcattaaataaagaggtgagagactgaggaaagaccccccccca----tg 296
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 437 agaccctgcctcaataaataaagaggtgagagactgaggaaagaccccccccccccggtg 496
Query: 297 tcaacttttaggtctctacatacatgtgtacacagataaacctgtaccttcccagacatg 356
|||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcaacttttaagcctctatatacatgtgtacacagataaacctgtaccttcccagacatg 556
Query: 357 taccaatgcacacatcaacaaaaccatatatgcatatgcaaaaggaaaaat-aaaccaaa 415
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 557 taccaatgcacacatcaacaaaaccatatatgcatatgcaaaaggaaaaatcaaac-aaa 615
Query: 416 ataatcttctatgagactgtctgtccaatacatttctatttagtgtttggccagcctcag 475
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 616 ataatcttctatgagactgtc----caatacatttctatttagtgtttggccagcctcag 671
Query: 476 tcttttgtagatccttatagctagatattatatatcagaatgaattatgttctcctcctc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tcttttgtagatccttatagctagatattatatatcagaatgaattatgttctcctcctc 731
Query: 536 ctatttctgctcctcttcctcctcctcctgattttacaccttttctttgagcgtgcatgt 595
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct: 732 ctatttctgctcctcttcctcctcctcctgattctacacctttcctttgagtgtgcatgt 791
Query: 596 gctttctg 603
||||||||
Sbjct: 792 gctttctg 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 999
Length adjustment: 10
Effective length of query: 593
Effective length of database: 989
Effective search space: 586477
Effective search space used: 586477
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_k09.g1 MSMg01no518_k09.g1 CHROMAT_FILE:
MSMg01no518_k09.g1 PHD_FILE: MSMg01no518_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:07 2005
(651 letters)
>mm_chr12_104306776_104307826
Length = 1051
Score = 801 bits (414), Expect = 0.0
Identities = 472/500 (94%), Gaps = 17/500 (3%)
Strand = Plus / Minus
Query: 164 ggttcgaggcaaggtttttctgtacagccctggctgtcctggaacttgctctgtagaaca 223
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1051 ggttcgaggcaaggtttttctgtacagctctggctgtcctggaacttgctctgtagaaca 992
Query: 224 ggctggccttgaactcacaaagatccttgagtgctgaaattaagggcatgtgtcatcacc 283
||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 991 ggctggcctcgaactcacaaagatccttgagtgctgaaattaagggcgtgtgccatcacc 932
Query: 284 accaagaggtttgaatctgcatctccataatgactgaggatgtcaaatactttttaaaat 343
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 atcaagaggtttgaatctgcatctccataatgactgaggatgtcaaatactttttaaaat 872
Query: 344 gttggctggccatttgtgtgttttttttttttttggagaactttccactaagctccataa 403
|||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 871 gttggctggccatt--tgtgtttctttttttt---gagaactttccactaagctccataa 817
Query: 404 tgaaaaggaagcacagttataggaaggtacagatattgatcgtagactgaatctgagcta 463
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 816 tgaaaaggaagcacagttataggaaggtacagatattgatcgtggactgaatctaagcta 757
Query: 464 ttctgccatggatttctggagcctatgtgagttgtaattccaaagttctagtcttactgt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ttctgccatggatttctggagcctatgtgagttgtaattccaaagttctagtcttactgt 697
Query: 524 gatgagcagcaatgaaaattactctttttaaagctagattagcatgcagctgctcctgtc 583
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 696 gatgagcagcaatgaaaattactcttttaaaagctagattagcatgcagctgctcctgtc 637
Query: 584 tgtagagagacatgcttcctcctgccacacacaccct-----------ttttctttatgg 632
|| ||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 636 tgcagagagacacgcttcctcctgccacacacaccctgtactgcgggtttttctttatgg 577
Query: 633 aca-gcacaggtacagaata 651
||| ||||||||||||||||
Sbjct: 576 acaagcacaggtacagaata 557
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
