Query= MSMg01no518_n02.b1 MSMg01no518_n02.b1 CHROMAT_FILE:
MSMg01no518_n02.b1 PHD_FILE: MSMg01no518_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:20 2005
(713 letters)
>mm_chr12_102284176_102285288
Length = 1113
Score = 1220 bits (631), Expect = 0.0
Identities = 646/651 (99%)
Strand = Plus / Minus
Query: 63 tatttactgtgccttttttaaggtttttggggacttttgtgttggtgtttagggttagaa 122
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1112 tatttactgtgcctttttaaaggtttttggggacttttgtgttggtgtttagggttagaa 1053
Query: 123 aatattgaactcaggctggagaagtgggttggtggataaaggcagcttgctgctgaattt 182
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1052 aatattgaactcgggctggagaagtgggttggtggataaaggcagcttgctgctgagttt 993
Query: 183 agtcccttgaacctacatggtgggagaggtccaactccttaaagctgtcttctgtcctcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 agtcccttgaacctacatggtgggagaggtccaactccttaaagctgtcttctgtcctcc 933
Query: 243 atatgtgagccacgcatgctaaatggagaacaaaaacagaactctgtaaaaagaatagat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 atatgtgagccacgcatgctaaatggagaacaaaaacagaactctgtaaaaagaatagat 873
Query: 303 ttcatttaaagctttattgtgaagccagaggcagctcggtggtagagtgctttacctggc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 ttcatttaaagctttattgtgaagccagaggcagctcggtggtagagtgctttacctggc 813
Query: 363 atactagcatcataagcccctgactcaatcctgagcatcaatgggatgggttgggggagg 422
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 812 atactagcatcatgagcccctgactcaatcctgagcatcaatgggatgggttggaggagg 753
Query: 423 gagcagagcttctattattagttctatgtgtggcaatgaaatcttgtgtcaatgtagtac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gagcagagcttctattattagttctatgtgtggcaatgaaatcttgtgtcaatgtagtac 693
Query: 483 aaaaaatgtgatcagaactgaacacaaagattcctccccttaatgaagatttgccgtgtt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aaaaaatgtgatcagaactgaacacaaagattcctccccttaatgaagatttgccgtgtt 633
Query: 543 gtgagcagaaacagtgcactttacattaaaaatgccaattgggcataactaggagttttc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gtgagcagaaacagtgcactttacattaaaaatgccaattgggcataactaggagttttc 573
Query: 603 tcatctgctttgaatggctggactttatagaattgactggtaacctttggaaaacaactt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tcatctgctttgaatggctggactttatagaattgactggtaacctttggaaaacaactt 513
Query: 663 gttattcagtatcaaagactaatagtattggatatttttgatgtggggcta 713
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gttattcagtatcaaagactaatagtattggatatttttgatgtggggcta 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space: 775409
Effective search space used: 775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no518_n02.g1 MSMg01no518_n02.g1 CHROMAT_FILE:
MSMg01no518_n02.g1 PHD_FILE: MSMg01no518_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:20 2005
(650 letters)
>mm_chr19_53163506_53164555
Length = 1050
Score = 694 bits (359), Expect = 0.0
Identities = 577/673 (85%), Gaps = 46/673 (6%)
Strand = Plus / Plus
Query: 1 atgccaagccgacacttaatcaactgagctacatccctagtcttatttatctactcttaa 60
||||| |||| |||||||||||| ||||||||||||||| |||||||||| |||||||
Sbjct: 196 atgccgagccaacacttaatcaattgagctacatccctaatcttatttatttactctt-- 253
Query: 61 acaaaaacaaaacaaaacaaaacaaaaaaagtgcaccacctgggactaacaacagttttg 120
||||| ||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 254 --aaaaagaaa------------aaaaaaagtgcaccatctgggactaacaacagttttg 299
Query: 121 tgtcaca---------aaagtatgtgtgtactgaggtacaaggtttacagcgggacagca 171
||||||| ||||||||||||||||||||| |||||||||||||||||| | |
Sbjct: 300 tgtcacagaagataagaaagtatgtgtgtactgaggtgcaaggtttacagcgggacggta 359
Query: 172 gcgacac-ggagcaccttatggctccatcatcgtgcgtgccatccttgcacaggagccat 230
| ||||| || |||| |||||||||||||| |||||||| || |||||||||||||||||
Sbjct: 360 gagacacagg-gcactttatggctccatcagcgtgcgtgtcacccttgcacaggagccat 418
Query: 231 gcctagctcttctgcatt------------gtacaggtgccgctgaagcaggccgtgata 278
|||||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct: 419 gcctagctcttctgcattgttccagtgacagtacaggtgctgctgaagcaggcagtgata 478
Query: 279 attaaatcaccaaccctggcacgctcactagctgtcactcagtcacatgatataagttca 338
|||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct: 479 attaaatcaccaaccctggcacactcattagctctcactcagtcacatgatataagttca 538
Query: 339 cttagcacccactacatgcagggggcgatcatatagaaggctagaacaaacatcttgatt 398
|||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||
Sbjct: 539 cttagcacccactacatgcagggggcaatcatgtagaaggctagaagaaacatcttgatt 598
Query: 399 aatttagtctcaagcaatacggtcacttgacagcatgtgttctcttcaaatgcagggaga 458
||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||| | |
Sbjct: 599 cgtttagtctcaagctataaggtcacttgacagcatatgtactcttcaaatgcaggaata 658
Query: 459 gctggcaagggggactaaacgtgtaaacagaccacagaaataaaacc-cttaaaatttaa 517
|| |||||||||||||||| |||||||||||||| ||||||||| | ||||||||||||
Sbjct: 659 actcgcaagggggactaaacatgtaaacagaccac-gaaataaaaactcttaaaatttaa 717
Query: 518 aacgtctgttaatcaaatcgggtctggggacatacttcagttggcagagtgcttggttaa 577
|| ||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 718 aatttctgttaatcagatctggtctggggacatacttcagttaacagagtgcttggttaa 777
Query: 578 cgtgcg---agtcctgggtcagagtcccagcagcactcagattggcctggtgacaac-ct 633
| |||| || ||||||||||| ||||| || ||| |||| |||| ||||| || | ||
Sbjct: 778 catgcggggagacctgggtcagactcccaacatcacacagactggcatggtgcca-ctct 836
Query: 634 ggtctcggctata 646
|||||||||||||
Sbjct: 837 ggtctcggctata 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
