BAC Information

Click to search

BAC

Clone NameMSMg01-518O03
Chromosome12 (Build37)
Map Location 52,551,174 - 52,551,827
singlet/doubletsinglet
Overlap genenone
Upstream genePrkcm, LOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390
Downstream geneLOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518O03.T7 (MSMg01no518_o03.b1)MSMg01-518O03.TJ (MSMg01no518_o03.g1)
ACCAG590286AG590287
length742747
length of high quality
(start - end)
412 (51 - 462)655 (81 - 735)
definitionCHROMAT_FILE: MSMg01no518_o03.b1 PHD_FILE: MSMg01no518_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:26 2005CHROMAT_FILE: MSMg01no518_o03.g1 PHD_FILE: MSMg01no518_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTATTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGACCTGCACAGCCCCTGCTTTAGGTTTTTGTTGTTGTT
GTTGTTTTGATTTTGGTTTTTTGAGCCATGGTTTTAAGGTAGTCTAAGAT
GACTTTGAATTCATTATATCCTGCCTCAGCCTTCCGCAGTGCCACGGATG
GACCAATCACACCTGGTTACAATACCTGTTTTAAATGTAGCTTTATTCAG
CTATAATTTATAATTCATAGAATCCATCCATTTAAAAGACAGGATTCAGT
GACTTCTAGAAAGTTTATGATCCTCACCGTAGATCAATTTCAGAATATTC
AATCACATCCAAAATGATGCCTCCTGGTGAAGAGCCGGCTCGCCCTTTCC
TCTCCATCACATGACCTCAGCAGTCCACTTCCTCTCCCTATAGACTTGGA
CATTTATGTACGTGGAGTCCTACACTAGTGCATGATGTGGAGGTGTGACT
ATGCTGAAGTGTGCATCAGCTGAACAGCCCTTGCCTGGGCTGACAGAATG
CCTCCGTGGTTTTAGCATGCATTTCTTTCATCACTTGGCTGTCTTCTGAG
GGGAAGGGACAAAATTGCTTGGTCGGCGAGTTGGGAATTACTCGGTGTTT
CTTTTTTCTTTTTCATGGCTGCTTGAAAGATTTGATCTCTTTCTTGATAG
AATTGCGATTTTCTCATGAGTCTTATTATCCTTTTTTTGATA
NTTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTACCTACCTTTCATCTCT
TTGTTGTTGTTGTTGTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGT
CCTGGAACTCACTCTGTAGACCAGACTGGCCTCAAACTCAGAGATCCGCC
TGCCTCTGCATCCCTAGTGCTGGGACTAAAGGCATGTGCCACCACCGCCT
GGCTTACCTTTCATTTCTTTTCCAGTGGTTTCCCACATTGCTTATGGATC
TTTAGGTGGACATTTTAAAGCCACTTTGATATGTATTTCTTCTGAGACAC
ACACAGAGTAAAGACTGCTGTTTATAAAATGTTGATAGGACAACATATGA
TTTGCAATGGACAGACAAAAAACATCCATTCTTGAGAGTTCTGAATAGAA
CATAAAAATGTGCAGTACCACAGAGAACAGTAACCATCCAGTCACTGTTA
CTCGGAAGCAGGCACTAGGAAGTGGGCCACTGATAATTATAATTATATAA
TTATAATCTGGAGTAAGAGCTGTGTCAGAAGTTAGGGAACATCTGTCTCA
GGAGTTAAAGACACAGCAGAAATTTATGCAGAACAGGCACAAAATGTGAA
AGGATGGACTAATAAACTTTCTGCACTCAATTACTGAACGATGTACCTAC
AGGACATTTAAAATGCTGGCCTTGGCATGGAGCCGTCAGGAGTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_o03.g1 MSMg01no518_o03.g1 CHROMAT_FILE:
MSMg01no518_o03.g1 PHD_FILE: MSMg01no518_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:26 2005
         (655 letters)



>mm_chr12_52550974_52552028
          Length = 1055

 Score = 1212 bits (627), Expect = 0.0
 Identities = 648/655 (98%), Gaps = 1/655 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctacctacctttcatctctttgttgttgttgttgtttgagacagggtttctctgtgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctacctacctttcatctctttgttgttgttgttgtttgagacagggtttctctgtgtag 260

                                                                       
Query: 61  ccctggctgtcctggaactcactctgtagaccagactggcctcaaactcagagatccgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctggctgtcctggaactcactctgtagaccagactggcctcaaactcagagatccgcc 320

                                                                       
Query: 121 tgcctctgcatccctagtgctgggactaaaggcatgtgccaccaccgcctggcttacctt 180
           ||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 321 tgcctctgcctccctagtgctgggactaaaggcgtgcgccaccaccgcctggcttacctt 380

                                                                       
Query: 181 tcatttcttttccagtggtttcccacattgcttatggatctttaggtggacattttaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatttcttttccagtggtttcccacattgcttatggatctttaggtggacattttaaag 440

                                                                       
Query: 241 ccactttgatatgtatttcttctgagacacacacagagtaaagactgctgtttataaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccactttgatatgtatttcttctgagacacacacagagtaaagactgctgtttataaaat 500

                                                                       
Query: 301 gttgataggacaacatatgatttgcaatggacagacaaaaaacatccattcttgagagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgataggacaacatatgatttgcaatggacagacaaaaaacatccattcttgagagtt 560

                                                                       
Query: 361 ctgaatagaacataaaaatgtgcagtaccacagagaacagtaaccatccagtcactgtta 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 ctgaatagaacataaaaatgcgcagtaccacagagaacagtaaccatccagtcgctgtta 620

                                                                       
Query: 421 ctcggaagcaggcactaggaagtgggccactgataattataattatataattataatctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 ctcggaagcaggcactaggaagtgggccactgataattataattatata-ttataatctg 679

                                                                       
Query: 481 gagtaagagctgtgtcagaagttagggaacatctgtctcaggagttaaagacacagcaga 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gagtaagagctgtgtcagaagctagggaacatctgtctcaggagttaaagacacagcaga 739

                                                                       
Query: 541 aatttatgcagaacaggcacaaaatgtgaaaggatggactaataaactttctgcactcaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aatttatgcagaacaggcacaaaatgtgaaaggatggactaataaactttctgcactcaa 799

                                                                  
Query: 601 ttactgaacgatgtacctacaggacatttaaaatgctggccttggcatggagccg 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttactgaacgatgtacctacaggacatttaaaatgctggccttggcatggagccg 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)