BAC Information

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BAC

Clone NameMSMg01-519C04
Chromosome12 (Build37)
Map Location 119,828,456 - 119,828,620
singlet/doubletsinglet
Overlap genenone
Upstream geneRapgef5, A930023M06Rik, Cdca7l, Dnahc11, Sp4, LOC100042993
Downstream geneLOC668611, EG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519C04.T7 (MSMg01no519_c04.b1)MSMg01-519C04.TJ (MSMg01no519_c04.g1)
ACCAG590480AG590481
length833819
length of high quality
(start - end)
165 (59 - 223)---
definitionCHROMAT_FILE: MSMg01no519_c04.b1 PHD_FILE: MSMg01no519_c04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:46 2005CHROMAT_FILE: MSMg01no519_c04.g1 PHD_FILE: MSMg01no519_c04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTGGGGGCGCTAAACGACTCCTTTTCGGAGAGGATCCGCGGAATTCCA
CAGTTGCATTTTATGACCGGAGCTCAAGACTGAAATTTTACTTAAAAGCT
GGTGTTCAGGCACTGAGATCTGTGAGTTAAGGTTCTCCCTTAAGCTGCTC
TGTTCCCAGTCATCAGTACAGACCCAGTGAGCCAGATTAGATTTTAGATA
CACTATTTGTATATTATTGCTGAGTATCAGCATAAAGATTCATTACATTT
CACAACACATTGCTTTCTTTATGTCTATCATGTACTATGGAGAAAAGAGA
GGTCAGAATATGCTGAAAAAATAACTCACGAGACTTTAGATTTTCCTTCT
TCCAAGGATGTTCAAGGAATTTCTTGAATCTCCACATTTTTTTTATCTTT
TCCGGGGTAATCCCACACCTTTTGGTCTGATTTTCCCCCATGAAAAGGGT
CGGGTTGTAAATAAATATAAGCCCTTTTTTTATTGTAAGTTTTCCCCCCC
CGGGTGTCAAGTTATCCCTTTNCCCNNNNNNNNNNNNNNAAGGGCCTGAG
GAGGNGAGGTGGAANNNNNNTATGGATTGATAAGGGCTGTCANCCCTTCT
TTGGGTTTTCAACCTAGGACCCCCATAAACAGTGCCTATAAGTGTAATGA
GCTCGAATTGTTTTCCCACGGGGGTTGTTATAGGGGTAATTGTGTTTGAT
ATTTAGAAGGAAACACTATTCGTAGAGTGAGCGGTTTTTGTTTCCCTCCC
TTGTGGACCACCCTCATTTTCCTCTGGGCTTCGCGAAATATTTTATTTTC
TTTTTTTCCCTCTCTCTTCCTTTTTTCCCCTTG
NNAAAACCTTGCCCCCCTTTTCCCACTTTANNNACCTATNAATTATCCCA
NAATTATNCTTCNNNCNCATAATTCAATTGTTTGNCTANCAAGTCTAAAC
TCTAATTATATACTTTATATGTTTTTTTTTTTTTTTTTATCTGTATTTCT
TTTTTCCGCGGCCGCNNNCNNNNCNNNNNNNAAAACCNNNAACTTNNNNN
NCCNNNAAAACNCCNNNNANNNANNNAAAAANNCCNAACCCNNNNNNNNN
NNCNNNCCAAANNNNNNNNAAAAAAANNNAAACCCCCCCNAAATTCCNNA
ANAANNAANNNNNNNCCCCCCCCCCAAANNNNNNCCCCCCCCACCCCNCA
NNNNNNNCCCCCCCCCCCCCCCCNNNNNCCCCAACCCCCNNNCCACNNCN
CCCCCCCAAAAAAAANNNCCCCCCCCCCCANNNNNNNNNNCCNNNNNNNC
CCCCCCCCNCNNNNNNAACNNNNNCCCCCCCNNNNNNNNNNCCCCCCCCC
CACAAAAAAAANNNCNNNCNNNNNNNNNNANNAAAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCCCCNNNCCCCCCCCCCACNCNNNNNNNCCC
NCACNNCNNNCNCCCCCCCCCNACCCNNNNNNNCNNNNNNNNNNNAAACN
CNNNCNNNCNNNNNNNNANNNCNNNNNNNNNNCCCCCCCCNNCNNTTTTC
NNCNNCNCCCCCCNNCCCCCNANNNNNNCCCCCCCNNNNNNNNCNNNCCC
CNNNCCNNCCCCNCCCNNCNCCCCNAAATTCCTTTCCTTCTTACATATAT
ATATATTTTATTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_c04.b1 MSMg01no519_c04.b1 CHROMAT_FILE:
MSMg01no519_c04.b1 PHD_FILE: MSMg01no519_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:46 2005
         (165 letters)



>mm_chr12_119828256_119828820
          Length = 565

 Score =  296 bits (153), Expect = 5e-85
 Identities = 162/165 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttatgaccggagctcaagactgaaattttacttaaaagctggtgttcaggcactgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttatgaccggagctcaagactgaaattttacttaaaagctggtgttcaggcactgaga 260

                                                                       
Query: 61  tctgtgagttaaggttctcccttaagctgctctgttcccagtcatcagtacagacccagt 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 261 tctgtgagttaaggttctcccttaagctgctctgtccccagtcatcagtacagactcagt 320

                                                        
Query: 121 gagccagattagattttagatacactatttgtatattattgctga 165
           |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagccatattagattttagatacactatttgtatattattgctga 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)