BAC Information

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BAC

Clone NameMSMg01-519E06
Chromosome12 (Build37)
Map Location 73,116,045 - 73,116,618
singlet/doubletsinglet
Overlap genenone
Upstream gene3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190, Daam1, LOC666213
Downstream geneLOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519E06.T7 (MSMg01no519_e06.b1)MSMg01-519E06.TJ (MSMg01no519_e06.g1)
ACCAG590580AG590581
length723865
length of high quality
(start - end)		577 (43 - 619)---
definitionCHROMAT_FILE: MSMg01no519_e06.b1 PHD_FILE: MSMg01no519_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:56 2005CHROMAT_FILE: MSMg01no519_e06.g1 PHD_FILE: MSMg01no519_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTATTTATAGTCCTATAAATTCCTGTGATTGGCACTTAAGAGAAAAT
TCTCCTTAAAAATAATATTAGCCGCCGCTTATGAAGAGCAGGCACTGTCA
TAAACACTTCTCAGATATAAATCGATTTAAAACTCAAAGAGATGTTTTTG
CTTAAATGGTATACATGAGCAGATGGGGGCTTGAGAAAAGGAAGGTATTT
AGTGATGGTCATAGAGAATATAACCAGAACCTGATGAAAAACTCTGTACC
TTTAACAAATACTTAATAGGAAAGCAAAACAAAGCCACAGCACACGGGAA
TGTTCTCAAGGAATAGGACAGCCATGGACCAGCCACAGACTCTGGGTCAG
AGGGGACCACAATGGTACTAAAGAGTTCACTTTTGTTTTAGTTTTTCTGG
TGTCCATCTCTGATTCCCCTGTTGGTTATCTTTGAGCGCTCACAGGGTGG
TCAAAACGTCCTCCAGATCAAGGACAGTCATGGGATGTGGGCAAGGCCAG
CAGAGCCACCATATTCAGCCGGGATGACACTCTTGGGTGGCTTCTTTTCA
TTCTTACCTCGCAGAACCCAAGAGCTTCCTGGGTCTGATTTTCTTTCTGA
AGCACGATTCTTCAGCGGGCCCATCAGTTCTGAAAACCCAAAGTGAAATT
GTTTTCCTTCCCAGGATGGACTG

TCCTCTCTCTTTTTTCTTATAGACTTTTTCTTCTTTCCCTCCCTCTCTCC
TGTCTTCTATTTCTCTCCCCCCTCCTTCGCCACTCTTTTACTCTTTTTTT
TTTCGCCTCTTTCCCCCTTCTCCTCACCCCTTTTTCTCTTTTTCTCCTTT
TTCTTCCCCGCCTTTTGCCCCCCCCGTCCTTCTTTCTCTCCCTTTTTTAT
TGCCTTCTTTTCTTTCCCCGTGCTTTCTCTCTTTTGTTTTTCCCCTGACT
GCGTTCCCCCTCTTTTCATTCCTTTCCCTCCCCTTTCTCTTTTACCCTCC
CCCCTTTTCACCCCCCTCTCTTGTTTCCCCCTCCTTTTTTTTTTTTTTTT
TTTTTTCACTCAGCTTTTTTTTACGTTNTTTTGTTTTGTTTTTGTTTTTT
TTTTTTCCCTTTTTTTTTTTTTTTTCGTCTTCCCCTCTCTCTCCTCCTCN
NNTTTTTTTGTTNNGGTGCTCTCCCCTTTTTATTGNNNCGCCCTAGATGN
CCCTAATATTGNNNTAGTNCCCCTNGNNCCGNNCCCGNCCCCCNGNNGTT
TGCAAAGCGACCAATAGNANNNNTGAGACCACCTAATAAGGAAAAAGGCT
TCCCCGACAAAANGAAAACTCGCCCAACCCNTGAGNAGAGAAATTAACCT
GAAAAATCGTCCCAAGAAAATAAAAGCCCACCCGTGAAAAAAAAAAAAGT
TGCCCACACCCATCCCCCTAAAAATCCCCTCCCANNGNAAAAAAATGCCC
CAAAATCCCAAAAAACCCACCCTCTNCTCAAAAAAAAATCCCCCCCCCCG
TCCCAAAACCCCAAGGTTTCCCCGAAAAAATAGTCTCCTCTTAAAAAAAC
TCCCCCAGATTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_e06.b1 MSMg01no519_e06.b1 CHROMAT_FILE:
MSMg01no519_e06.b1 PHD_FILE: MSMg01no519_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:56 2005
         (577 letters)



>mm_chr12_73115841_73116818
          Length = 978

 Score = 1033 bits (534), Expect = 0.0
 Identities = 564/576 (97%), Gaps = 5/576 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatta---tttatagtcctataaattcctgtgattggcacttaagagaaaattct 61
           ||||||||||   |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaaaat--atagtcctataaattcctgtgattggcacttaagagaaaattct 262

                                                                       
Query: 62  ccttaaaaataatattagccgccgcttatgaagagcaggcactgtcataaacacttctca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccttaaaaataatattagccgccgcttatgaagagcaggcactgtcataaacacttctca 322

                                                                       
Query: 122 gatataaatcgatttaaaactcaaagagatgtttttgcttaaatggtatacatgagcaga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gatataaatcgatttaaaactcaaagagatgtttttgcttaaatggtatacatgagcaga 382

                                                                       
Query: 182 tgggggcttgagaaaaggaaggtatttagtgatggtcatagagaatataaccagaacctg 241
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgggggcttgaaaaaaggaaggtatttagtgatggtcatagagaatataaccagaacctg 442

                                                                       
Query: 242 atgaaaaactctgtacctttaacaaatacttaataggaaagcaaaacaaagccacagcac 301
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 443 atgaaaaactctgtacctttaacaaatacttagtaggaaagcaaaacaaagccacagcac 502

                                                                       
Query: 302 acgggaatgttctcaaggaataggacagccatggaccagccacagactctgggtcagagg 361
           |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 503 acgggaatgttctcaaggaacaggccagccatggaccagccacagactctgggtcagagg 562

                                                                       
Query: 362 ggaccacaatggtactaaagagttcacttttgttttagtttttctggtgtccatctctga 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggaccacaatggtactaaagagttcacttttgttttagtttttctggtgtccatctctga 622

                                                                       
Query: 422 ttcccctgttggttatctttgagcgctcacagggtggtcaaaacgtcctccagatcaagg 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttcccctgttggttatctttgagcgctcacagggtggtcaaaacgtcctccagatcaagg 682

                                                                       
Query: 482 acagtcatgggatgtgggcaaggccagcagagccaccatattcagccgggatgacactct 541
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 683 acagtcatgggatgtgggcaaggccagcagagccaccagattcagccaggatgacactct 742

                                               
Query: 542 tgggtggcttcttttcattcttacctcgcagaaccc 577
           ||||||||||||||||||||||||| ||||||||||
Sbjct: 743 tgggtggcttcttttcattcttaccacgcagaaccc 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 978
Length adjustment: 10
Effective length of query: 567
Effective length of database: 968
Effective search space:   548856
Effective search space used:   548856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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