BAC Information

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BAC

Clone NameMSMg01-519G09
Chromosome12 (Build37)
Map Location 114,246,094 - 114,246,729
singlet/doubletsinglet
Overlap genenone
Upstream geneTdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6
Downstream genePacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519G09.T7 (MSMg01no519_g09.b1)MSMg01-519G09.TJ (MSMg01no519_g09.g1)
ACCAG590682AG590683
length760735
length of high quality
(start - end)		---636 (69 - 704)
definitionCHROMAT_FILE: MSMg01no519_g09.b1 PHD_FILE: MSMg01no519_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:06 2005CHROMAT_FILE: MSMg01no519_g09.g1 PHD_FILE: MSMg01no519_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGATTCAGTC
ATTTCAGATGCAGGGTAGAGGTCAGGGAGACCACCTGCAGACAGACTTTC
AGGCCTCTGGCCCTGGGGCCAGGCACTGGCGGACTGGTCATGGTCTGGGG
GCAGGCCCAGCTTGGTGGACATAGGCCAAATTGTTCCTGGGTTGAGGTTG
CAGGCAGCCCCAACTGGGGAACAAGGTTGGGCCCCTGATCCCGTGGGACA
CTTGACAGTCCATTGAGTCAAGGCCCCCACAGGCAAAGCAAGTCTGCACG
GAAAGGGGGTGGAGGTGCAGGACTTTTCTGAGCCTGAGTTGGACAGGGGT
GGGAGGCCTGGGAGGCTTGTGTAGAGGTGGAATGGTAGGAGAAGGAGGAA
GTCTAGGTACCATACCAAATGCTTATTCTGTGGGGACTGTTTCTGTGAGG
TTGTAGAATATATGGTGTCTCTGACACTTGACCTTTTGTATTACCTGTAT
TTTATATTTCCCTCTACCTGTTTGTTCCTTAATATCTGACTGTCTTTTGT
TCATATATCCTCACCACCCCCTTTTTTTTTCGCTCCAGCTGTACTCTACA
GATATCTTCATTTCAAGATATATTATCCTTTCCATCTGTTTACTAACCTT
GTTTCTTTTTTTTCTTTTATCTTATCCTATTTTCTTTTAGTCTCACCCAT
CTTTATTTTTTTGATTTTCCTTTTCTTCCGCGCCCCGTTTTTTCCTTTCT
CTCCATTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACCTGGTCTACAGAGTGAGTTCTTGGATAGA
CAGGGTTACACAGAGAGACCCTGTCTCAGAAAACAAAACAAAAAACAACA
AAAACAAACAAACACAAGAGAGACAAAGAGACACAGAGAGACAGAGACGG
AGAACTTAATGTGTATGGGTATTGTGCCTGCTTGTATGTTTACACACCAC
GTTTATGTCTGGTACCAAAAGAGTCCAGAAGAGGCTGTCTGATTCCCTTA
GCTGTAGTTGCAGATGGTTGAAAGATGTTTTGTGGGTTCTGGGAATCGAA
CCCAGGTCTTCTTCAAGAGCAAACAGCGCTCTTAACCATGCAGCAACTTC
TCAACCCCTATGGCATTTTCTTACAGCAGCCTGACTTACAACACACTATG
TATGCAAAGCATTTGAGTCATTGTTTGAGGGTTAGGGGCAGAGACTCCTC
CTGACTATCTTATGACTCTGAATGCTGTTAACTTTGACTAGTTTCATCAT
TTTTCCAGGTGTTCCCCTTGCATTTCATTGGCTTATTAAATTCTGCCCAC
AATGGCAACATTGTCTCCTCCTGTTTTAAAGATTTGAATGACATGGGCTA
ATGTAGCACAAACATGATGCTAGTCTAAATGCCCACAGACAGAGGGCAAA
GTAGGGTGGTTACAGTTCATCCAGATTGTGTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_g09.g1 MSMg01no519_g09.g1 CHROMAT_FILE:
MSMg01no519_g09.g1 PHD_FILE: MSMg01no519_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:06 2005
         (636 letters)



>mm_chr12_114245894_114246929
          Length = 1036

 Score = 1230 bits (636), Expect = 0.0
 Identities = 636/636 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacctggtctacagagtgagttcttggatagacagggttacacagagagaccctgtctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctggtctacagagtgagttcttggatagacagggttacacagagagaccctgtctca 260

                                                                       
Query: 61  gaaaacaaaacaaaaaacaacaaaaacaaacaaacacaagagagacaaagagacacagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaacaaaacaaaaaacaacaaaaacaaacaaacacaagagagacaaagagacacagag 320

                                                                       
Query: 121 agacagagacggagaacttaatgtgtatgggtattgtgcctgcttgtatgtttacacacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacagagacggagaacttaatgtgtatgggtattgtgcctgcttgtatgtttacacacc 380

                                                                       
Query: 181 acgtttatgtctggtaccaaaagagtccagaagaggctgtctgattcccttagctgtagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgtttatgtctggtaccaaaagagtccagaagaggctgtctgattcccttagctgtagt 440

                                                                       
Query: 241 tgcagatggttgaaagatgttttgtgggttctgggaatcgaacccaggtcttcttcaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcagatggttgaaagatgttttgtgggttctgggaatcgaacccaggtcttcttcaaga 500

                                                                       
Query: 301 gcaaacagcgctcttaaccatgcagcaacttctcaacccctatggcattttcttacagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaaacagcgctcttaaccatgcagcaacttctcaacccctatggcattttcttacagca 560

                                                                       
Query: 361 gcctgacttacaacacactatgtatgcaaagcatttgagtcattgtttgagggttagggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcctgacttacaacacactatgtatgcaaagcatttgagtcattgtttgagggttagggg 620

                                                                       
Query: 421 cagagactcctcctgactatcttatgactctgaatgctgttaactttgactagtttcatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagagactcctcctgactatcttatgactctgaatgctgttaactttgactagtttcatc 680

                                                                       
Query: 481 atttttccaggtgttccccttgcatttcattggcttattaaattctgcccacaatggcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttttccaggtgttccccttgcatttcattggcttattaaattctgcccacaatggcaa 740

                                                                       
Query: 541 cattgtctcctcctgttttaaagatttgaatgacatgggctaatgtagcacaaacatgat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cattgtctcctcctgttttaaagatttgaatgacatgggctaatgtagcacaaacatgat 800

                                               
Query: 601 gctagtctaaatgcccacagacagagggcaaagtag 636
           ||||||||||||||||||||||||||||||||||||
Sbjct: 801 gctagtctaaatgcccacagacagagggcaaagtag 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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