BAC Information

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BAC

Clone NameMSMg01-519K13
Chromosome12 (Build37)
Map Location 82,903,163 - 82,903,608
singlet/doubletsinglet
Overlap genenone
Upstream gene4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9
Downstream genePcnx, Sipa1l1, LOC432675, EG666911, Rgs6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519K13.T7 (MSMg01no519_k13.b1)MSMg01-519K13.TJ (MSMg01no519_k13.g1)
ACCAG590877AG590878
length947762
length of high quality
(start - end)		---641 (65 - 705)
definitionCHROMAT_FILE: MSMg01no519_k13.b1 PHD_FILE: MSMg01no519_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:26 2005CHROMAT_FILE: MSMg01no519_k13.g1 PHD_FILE: MSMg01no519_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTGATCACCCTGTCGATATTATTTATTCCTCGGCGCGGGCGCGGACTCC
CCGATCTATCATCCAATGAGAATGATACGGCGCACTGTTCTGTATGTTGT
TCTTTCGATGTTTTACCAGATATAACAAGAGACGCAACGAGGAGGAGGGC
GTATATTAGACGGCGTAATAATAAAAGTACTTATTAAGTAACTAATTAAC
AACAACAATACATAACAGTGCTGGGGTATTCGCCAACGTCCCTTACCAGA
GGCGGCGCCCCGACACGACAACCCAAATCGAATTACTTCGTGCTACTTTT
TTTCCCCTCCCTTTGTTTATTCCGCTTTATATTATTTTGCCACGCTTTCA
GGAAGTGTACCCATATATGAATCGCGCGTCTTGTTCTAGATAAGACACGA
AGTAGTGCGGAATTATGAAACCATCATATCTCGCCTCACATTACTACTTT
ATATCCCTCATATAAACTTTTTTTGCTTGTTATGGTGTAACGTGTGCAGC
GACGAAAGAAAANCTTCTTACCTCCCCCNCCTCCCCCNCCCTTTTNTTAA
GAGGATAGGGAAAAGGGTACAAAATTGAAATTGATATAAGACATCACTTA
CGTATTTAACCCTCCCCAAGATAGTTATTGGTTGNTTTTTCCTCGCGCAG
TGGAGTTTTAATAGTCGAAAATTTAAATGTCGCAGGTTGAATTCGAGTAC
AGATATCGCGTGTCCGCCCGATATTATTTTTCATCTTCATAGCCTGTGAG
AGACCGTATAATCTATTATCACTGTACCCACGAAAATCTTATGCCTTCCC
GCCGTGGTCACGCTCTTCTCTGTGTACCGTTGGGATTTGTGGCCCTCCGA
AGCCATACTATTTTTTAAACGAAAGCGTGACGCCAGAGGGAGGAGGGTGT
GATGATTNTTTTGGAGGCGAGAGGTTATATCTTTTATGATGGTGTAT

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGAGACTGTAGACCATGAGCCAAGACTCCTTGCTTG
GTCATGACCCCCACCCACAGTATGTCCTACTGCCTAGGACACTGTGTCAG
GGCATGTTCTATCCTGTGCTGTGACACTAGGTCTTTGTCAGCCTATCTTA
AAACCATCAAACGGGGGGTGGTGGGGAGACTTCAGGGGTGCTCTTCAACT
TCAAGGTAGCTGTCTTTGTCACATGAGGATGATTTCTCACATGAAGCCGA
TTTGCCATGGTTTATCTTGGTTCTCTGCTTGACTAAGTCTGGAATTAACT
AAACCCAGGCGGCTAGACACACCTGTGAAGGAGTCTTCTTGGTTGGATCA
TTTGAGGTTAGAAGATCCACCCTCTGGGGGCAGCCTCTATTAATGACACG
GAAGGAGGAAGCTTCTGGGTTTTGCCTGCTTTTTGCCTTCACTCTCACTG
TCAAGCTCTTCTCCCCTGTCCCTGGGGCATCCCTTTGCTGGTGTTAGAAC
CTACTTCTTAGCTAGTGAAATGTACACTGAAACCCATAGCTCTCTAGGAC
TTCGCTGGGACTCCAGCACCAGATTGGGACTGCCAAGACATACGGTCTCC
TAGGCTGGATAACTACCAGACCCTTTCTACCAGCCGTTGTTGGGCTACTT
GAACCAGAGGCCAGAAACCATTCTAGAAAATTCCATGTGTTCATTCTGTC
CATTGTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_k13.g1 MSMg01no519_k13.g1 CHROMAT_FILE:
MSMg01no519_k13.g1 PHD_FILE: MSMg01no519_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:26 2005
         (641 letters)



>mm_chr12_82903163_82904207
          Length = 1045

 Score =  812 bits (420), Expect = 0.0
 Identities = 438/446 (98%), Gaps = 4/446 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagactgtagaccatgagccaagactccttgcttggtcatgacccccacccacagtatg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 446 tgagactgtagaccatgagccaagactccttgcttggtcatgacccccacccacaggatg 387

                                                                       
Query: 61  tcctactgcctaggacactgtgtcagggcatgttctatcctgtgctgtgacactaggtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcctactgcctaggacactgtgtcagggcatgttctatcctgtgctgtgacactaggtct 327

                                                                       
Query: 121 ttgtcagcctatcttaaaaccatcaaa----cggggggtggtggggagacttcaggggtg 176
           |||||||||||||||||||||||||||     ||||||||||||||||||||||||||||
Sbjct: 326 ttgtcagcctatcttaaaaccatcaaaaggggggggggtggtggggagacttcaggggtg 267

                                                                       
Query: 177 ctcttcaacttcaaggtagctgtctttgtcacatgaggatgatttctcacatgaagccga 236
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 266 ctcttcaacttcaaggtagctgtctttgtcacatgaggatgatttctcacatgaggccga 207

                                                                       
Query: 237 tttgccatggtttatcttggttctctgcttgactaagtctggaattaactaaacccaggc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tttgccatggtttatcttggttctctgcttgactaagtctggaattaactaaacccaggc 147

                                                                       
Query: 297 ggctagacacacctgtgaaggagtcttcttggttggatcatttgaggttagaagatccac 356
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ggctagacacacctgtgaaggcgtcttcttggttggatcatttgaggttagaagatccac 87

                                                                       
Query: 357 cctctgggggcagcctctattaatgacacggaaggaggaagcttctgggttttgcctgct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  cctctgggggcagcctctattaatgacacggaaggaggaagcttctgggttttgcctgct 27

                                     
Query: 417 ttttgccttcactctcactgtcaagc 442
           ||||||||||||||||||||||||||
Sbjct: 26  ttttgccttcactctcactgtcaagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1045
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1035
Effective search space:   653085
Effective search space used:   653085
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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