Query= MSMg01no519_l23.b1 MSMg01no519_l23.b1 CHROMAT_FILE:
MSMg01no519_l23.b1 PHD_FILE: MSMg01no519_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:33 2005
(256 letters)
>mm_chr12_90787070_90787725
Length = 656
Score = 426 bits (220), Expect = e-124
Identities = 247/256 (96%)
Strand = Plus / Minus
Query: 1 ccatttctgaacaaacatgtaaaaactacactaatacccattagttcaaggcccactgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ccatttctgaacaaacatgtaaaaactacactaatacccattagttcaaggcccactgag 397
Query: 61 catgcacaggcgaacaaatgaagagcatgggtccaacagccaaagaagttttggcaaagt 120
||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 396 cattcacaggtgaacaaatgaagagcatgggtccaacagccaaagaaggtttggcaaagt 337
Query: 121 tatgttttctccacgtgttaaaatgtgctagaagatttacaatgaaacgctatgttagaa 180
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 336 tatgttttctccaggtgttaaaatgtgctagaagatttacaatgaaacactatgttagaa 277
Query: 181 aaaagtcctaaagaatcttaattactgcgctgtggagatatatgggatttgaatatgaag 240
| ||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct: 276 agaagtcctaaagaatcttaattactgcgctgtggggatatatggtatttgaatgtgaag 217
Query: 241 ctacattttgacagta 256
||||||||||||||||
Sbjct: 216 ctacattttgacagta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space: 159809
Effective search space used: 159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no519_l23.g1 MSMg01no519_l23.g1 CHROMAT_FILE:
MSMg01no519_l23.g1 PHD_FILE: MSMg01no519_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:33 2005
(490 letters)
>mm_chr12_90628142_90629032
Length = 891
Score = 934 bits (483), Expect = 0.0
Identities = 489/491 (99%), Gaps = 1/491 (0%)
Strand = Plus / Plus
Query: 1 gttcttgacgaaagaaagaacgaccataacaagtctactttgggctttgaaatcaaactt 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttcttgacaaaagaaagaacgaccataacaagtctactttgggctttgaaatcaaactt 260
Query: 61 ttctttcaaattttacttgtcaatttttttt-ctcactctgaattatgtttcaaatttct 119
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ttctttcaaattttacttgtcaatttttttttctcactctgaattatgtttcaaatttct 320
Query: 120 tactttttctctgagagttcattccagggaactcacttgccacatcaccaaagatttagt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactttttctctgagagttcattccagggaactcacttgccacatcaccaaagatttagt 380
Query: 180 tattttatttattccctttaatctgatcatttataatcgattccagttattgtcctacaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattttatttattccctttaatctgatcatttataatcgattccagttattgtcctacaa 440
Query: 240 aatgatattttggtatgacattaattctttttggcttcagtatttgttactaggatacaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgatattttggtatgacattaattctttttggcttcagtatttgttactaggatacaa 500
Query: 300 tgaagcttgattattttggctccaggcagagcaacatttaattcactgatttattccttt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaagcttgattattttggctccaggcagagcaacatttaattcactgatttattccttt 560
Query: 360 attcctttaatacatatttattgtgaaacagaaacataattatagagactcttagagcca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attcctttaatacatatttattgtgaaacagaaacataattatagagactcttagagcca 620
Query: 420 gaacgaattttaaaatcttttagatcaaactaaccctcatactacaaatttaatcatgag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaacgaattttaaaatcttttagatcaaactaaccctcatactacaaatttaatcatgag 680
Query: 480 catgtaagaag 490
|||||||||||
Sbjct: 681 catgtaagaag 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 891
Length adjustment: 10
Effective length of query: 480
Effective length of database: 881
Effective search space: 422880
Effective search space used: 422880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
