BAC Information

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BAC

Clone NameMSMg01-519N07
Chromosome12 (Build37)
Map Location 117,299,323 - 117,464,031
singlet/doubletdoublet
Overlap geneVipr2, LOC676058, Wdr60
Upstream geneIgh, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386
Downstream geneLOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519N07.T7 (MSMg01no519_n07.b1)MSMg01-519N07.TJ (MSMg01no519_n07.g1)
ACCAG591008AG591009
length752729
length of high quality
(start - end)		597 (41 - 637)162 (71 - 232)
definitionCHROMAT_FILE: MSMg01no519_n07.b1 PHD_FILE: MSMg01no519_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:40 2005CHROMAT_FILE: MSMg01no519_n07.g1 PHD_FILE: MSMg01no519_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,463,439 - 117,464,031)(117,299,323 - 117,299,481)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTATGCAGTTGAGGATGGCCTTGAACTTCGGCTCTCCTGCCTCTACCTT
ACCTCTCGAGTGCAGGGCTTACAGAAGTGCCCCCCACCATGCCTTTTACA
ATATCTTAAAATGGCTTGTAGTGAGTGCCTTTGTCACTTACTCAGATTCT
TCTGCCTTCCATGTGACTCTGGTCCTGTTACTGTCTGGGCCACTGGCATC
TTCCCTTTCATATCACTTCATTTTTGGTTGGAGGGACTATGCCTTGATGG
TGTGTACCTGTGTACATGGATAGTAGATGCCTTAACATGATCATATTCCT
ACAGAATGGATTTTCTTATTCTACTGTCTGTGTGAAGAAACTCACACTTG
GGCAGTTGACATTTATTTATATGTACAAGTCTGTGTTCTACTTAATTGTA
TCCTGTGAGTACCTTCAGGTGTCAGTCCATACTTTAGTCAGTTATTCTGT
GAATGTGCCTACTATAGAATGTAGACATTAACTTCCTGTGATTGATTTTT
CAGGTCACATGCTGCTGCTTTAGCCCTTTAAAAGCATTTTTGCTGTTTGC
GGGAACAGTACATGGCTCTGTGGTTGTATGGGACTTAAGAGAAGACTCCA
GGATCCACCATTATGTGAGACTGAGCAATTGTTTCTGGGCTTTCAGGACC
CCGACATTCTCCACTGGTTAGTGTTGTCTATCTGCCCTCTAAAAAAGCCT
TG

AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACGCATGAGACAAAAACTGGCAAATGTGCA
CAACTGGACAGTTATTTATAGCTCTTCAGCTTTCACTAAATACAGAAAAT
CACACACGAGACAAACCCTACAAGTGTAGAAAAAGTGAAACTTTTACCAT
TTTGCATACCTTAACCCCTGAGTTTATACNTAGNAATGGNNAAACANCTG
GCAAACATAACTGTTTCAAAGCCTTTTACATTCAGGGCCCAAAGGCTTTT
TTACTTCCGCAGAAAACCCCCCGGGAAAAAAATTTTTTTTTTTTTTGTGG
CCCCCGGGGGGGGGCAACCTTTAGAAGAAGAGAGGGGGGAAATTTTTTTT
TTTTTCCGGGGTGGGGGCCGCCGCCTTGTGGGGGTATAAAAAAAAACTCT
TTTTTTAATAAAACGGGGGGCGCCCCCCTTTTTAATTTGTGTGGGGGGAA
TATTAAAGACGGCGCTCCCCCCTCCTTTTTNNAAATTANNNNNTTGGTTN
NNNNNNNNNNAAGGAGGAGAGTGAGATNTGATNTGNTGNNNNTNTAGGAG
NAGTAGGAGAAGAGNCTGNAAGNNAGNNNGNNGAGNNNAGNNNAGNTGGG
GGTTTGTNNTTGNNTTAGGNCCAGCCCTAGGGGGAGGGGAGTAAGTAGAA
NTANANCANATCAGNANAGTATAGTGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_n07.b1 MSMg01no519_n07.b1 CHROMAT_FILE:
MSMg01no519_n07.b1 PHD_FILE: MSMg01no519_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:40 2005
         (597 letters)



>mm_chr12_117463131_117464127
          Length = 997

 Score = 1147 bits (593), Expect = 0.0
 Identities = 593/593 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctatgcagttgaggatggccttgaacttcggctctcctgcctctaccttacct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gaattctctatgcagttgaggatggccttgaacttcggctctcctgcctctaccttacct 842

                                                                       
Query: 65  ctcgagtgcagggcttacagaagtgccccccaccatgccttttacaatatcttaaaatgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ctcgagtgcagggcttacagaagtgccccccaccatgccttttacaatatcttaaaatgg 782

                                                                       
Query: 125 cttgtagtgagtgcctttgtcacttactcagattcttctgccttccatgtgactctggtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cttgtagtgagtgcctttgtcacttactcagattcttctgccttccatgtgactctggtc 722

                                                                       
Query: 185 ctgttactgtctgggccactggcatcttccctttcatatcacttcatttttggttggagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ctgttactgtctgggccactggcatcttccctttcatatcacttcatttttggttggagg 662

                                                                       
Query: 245 gactatgccttgatggtgtgtacctgtgtacatggatagtagatgccttaacatgatcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gactatgccttgatggtgtgtacctgtgtacatggatagtagatgccttaacatgatcat 602

                                                                       
Query: 305 attcctacagaatggattttcttattctactgtctgtgtgaagaaactcacacttgggca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 attcctacagaatggattttcttattctactgtctgtgtgaagaaactcacacttgggca 542

                                                                       
Query: 365 gttgacatttatttatatgtacaagtctgtgttctacttaattgtatcctgtgagtacct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gttgacatttatttatatgtacaagtctgtgttctacttaattgtatcctgtgagtacct 482

                                                                       
Query: 425 tcaggtgtcagtccatactttagtcagttattctgtgaatgtgcctactatagaatgtag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcaggtgtcagtccatactttagtcagttattctgtgaatgtgcctactatagaatgtag 422

                                                                       
Query: 485 acattaacttcctgtgattgatttttcaggtcacatgctgctgctttagccctttaaaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acattaacttcctgtgattgatttttcaggtcacatgctgctgctttagccctttaaaag 362

                                                                
Query: 545 catttttgctgtttgcgggaacagtacatggctctgtggttgtatgggactta 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 catttttgctgtttgcgggaacagtacatggctctgtggttgtatgggactta 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no519_n07.g1 MSMg01no519_n07.g1 CHROMAT_FILE:
MSMg01no519_n07.g1 PHD_FILE: MSMg01no519_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:40 2005
         (162 letters)



>mm_chr12_117299123_117299684
          Length = 562

 Score =  308 bits (159), Expect = 2e-88
 Identities = 159/159 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgcatgagacaaaaactggcaaatgtgcacaactggacagttatttatagctcttcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgcatgagacaaaaactggcaaatgtgcacaactggacagttatttatagctcttcagc 260

                                                                       
Query: 61  tttcactaaatacagaaaatcacacacgagacaaaccctacaagtgtagaaaaagtgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcactaaatacagaaaatcacacacgagacaaaccctacaagtgtagaaaaagtgaaa 320

                                                  
Query: 121 cttttaccattttgcataccttaacccctgagtttatac 159
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttaccattttgcataccttaacccctgagtttatac 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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