Query= MSMg01no519_n20.b1 MSMg01no519_n20.b1 CHROMAT_FILE:
MSMg01no519_n20.b1 PHD_FILE: MSMg01no519_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:43 2005
(594 letters)
>mm_chr12_79963508_79964505
Length = 998
Score = 1091 bits (564), Expect = 0.0
Identities = 585/594 (98%), Gaps = 4/594 (0%)
Strand = Plus / Plus
Query: 5 gaattcctggaatttaaaatcagctgttgaagttatttgccctgtttgggtaactgcgaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctggaatttaaaatcagctgttgaagttatttgccctgtttgggtaactgcgaa 264
Query: 65 aataaaactggagttttgtaattatggacgctgaaagcgtaaaactttagagttaagtgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aataaaactggagttttgtaattatggacgctgaaagcgtaaaactttagagttaagtgt 324
Query: 125 gtactcgcattggggctcttaaacacccccttatatttagggtgctttaattttcactaa 184
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 325 gtactcgcattggggctcttaaacacccccttatatttaggatgctttaatttccactaa 384
Query: 185 gg----aacattgtttcttgaagaaagggtgcatcagaaaagtcttgatttttctcctcc 240
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 ggaacaaacattgtttcttgaagaaagggtacatcagaaaagtcttgatttttctcctcc 444
Query: 241 tcaagttgttgttaaagaggtggagaccctcgacagttcatcaaaaatgtcagttatgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaagttgttgttaaagaggtggagaccctcgacagttcatcaaaaatgtcagttatgaa 504
Query: 301 attgtagtgctttttctgtgcctatgatgccagatggtgggccctaattctcaaaagact 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 attgtagtgctttttctgtgcctatgatgccagatggtgggccctgattctcaaaagact 564
Query: 361 tagttgtactagtaagctttagagctgaacagcgttttcccagcgtggtacattttattt 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagttgtactagtaaactttagagctgaacagcgttttcccagcgtggtacattttattt 624
Query: 421 tggaatgttcattgcccatatctgctatggtgacatgacaatgtaccgactctagaagtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggaatgttcattgcccatatctgctatggtgacatgacaatgtaccgactctagaagtt 684
Query: 481 aacaggggcaaaatactaataatgcaaggtatttgaaactagctttgaagtgtgtttttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aacaggggcaaaatactaataatgcaaggtatttgaaactagctttgaagtgtgtttttg 744
Query: 541 tttgtttacatcagaacacatacagtctgtatggcattaactacagaagtggga 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttgtttacatcagaacacatacagtctgtatggcattaactacagaagtggga 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 998
Length adjustment: 10
Effective length of query: 584
Effective length of database: 988
Effective search space: 576992
Effective search space used: 576992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_n20.g1 MSMg01no519_n20.g1 CHROMAT_FILE:
MSMg01no519_n20.g1 PHD_FILE: MSMg01no519_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:43 2005
(572 letters)
>mm_chr12_80111277_80112248
Length = 972
Score = 915 bits (473), Expect = 0.0
Identities = 497/515 (96%), Gaps = 16/515 (3%)
Strand = Plus / Minus
Query: 1 ggctgcctgcagctcctaacgctttccttcctctgcagagtgctgcctcccaaagcccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggctgcctgcagctcctaacgctttccttcctctgcagagtgctgcctcccaaagcccag 456
Query: 61 aagaaagccaagctgctgccagacacagggaggactagagggctttgttccacagcaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aagaaagccaagctgctgccagacacagggaggactagagggctttgttccacagcaagg 396
Query: 121 ggtgcagaggataccccctcatcagcttgaccttgctgctaggtttaatgaggtcacttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggtgcagaggataccccctcatcagcttgaccttgctgctaggtttaatgaggtcacttg 336
Query: 181 tttgagttgggagagtcttgtgtctttctgtatagcccatttgagtgcttgtagtccttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 335 tttgagttgggagagtcttgtgtctttctgtatagcccatttgagtgcttgtagttcttc 276
Query: 241 tcctggctttactcccaagagaaaacagttcccgttattgaaagtctacttatgtgctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcctggctttactcccaagagaaaacagttcccgttattgaaagtctacttatgtgctca 216
Query: 301 ggacttcacatg----------------tatcacatcatattcataaggtaggcgatagt 344
|||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 215 ggacttcacatgtatgaagtcaccggattatcacatcatattcataaggtaggcgatagt 156
Query: 345 atctctagtacacaggagacaaggaaagccgaaagttcttatcaatcgcatcttgtagct 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 atctctagtacacaggagacaaggaaagccgaaagttcttatcaatcgcatcttgtagct 96
Query: 405 gtagacattctctattggtctggggggcccaagataatgcttgtcattcctacctgaact 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 gtagacattctctattggtctggggggcccaagataatgcttgtcattcctacctgaact 36
Query: 465 ccaatgcttcccccatgatgttagatggattccag 499
|||||||||| ||||||||||||||||||||||||
Sbjct: 35 ccaatgcttcacccatgatgttagatggattccag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
