BAC Information

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BAC

Clone NameMSMg01-520G07
Chromosome12 (Build37)
Map Location 25,261,600 - 25,262,238
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042923, LOC677338, EG668701, LOC668471, LOC668703, LOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b
Downstream geneGrhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520G07.T7 (MSMg01no520_g07.b1)MSMg01-520G07.TJ (MSMg01no520_g07.g1)
ACCAG591435AG591436
length760757
length of high quality
(start - end)
653 (45 - 697)627 (75 - 701)
definitionCHROMAT_FILE: MSMg01no520_g07.b1 PHD_FILE: MSMg01no520_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:26 2005CHROMAT_FILE: MSMg01no520_g07.g1 PHD_FILE: MSMg01no520_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCTTTCATATTTCACCATTAACAACAAAATAAAGATGGCTCATTGG
TTAAGAGTGCACAATGCCCTTGCACAGGAGTTTGGGACCTGACACTCACA
GTAGGCAGCTCACAACTCTAGCTCCAGGGAATCCAACTTCTTCCAGTTTC
TGTACTCATGTACAGAAACGTGCCTATACATCCTCATATGCATACACATA
ACTAAAATTACATAGACCTTTGTTAAAAAAGATAACACCAAGTACTCTTG
GATTGACTAGCAATCTGTTTAAAGCACTGCTAGTTATCAAGTAATAACAA
CTGATGCCTAGGACCAACCAGTTCAAATGGCCATCCCTGGGCGTCTGCTG
CTGGACAACGCCAAAGAGAAGGTGAACGCAGGCCACACCCCAGCACTGGT
CTGTGGCTGAAACCCTAACTGAATGCATCCGAGCCGCTGGGCTTGAGAGT
CAAAAGTGACACACAGGCTGGCCTTACATCCTATGCCCAGTATGATACAG
GTCACCAGTGAGTGGCAACTGAATTACTAGAATTCCATTAAGAACCATCA
GGCAGAACGGTATAAAAAACCCACACATGGTGCACTTGAGAGTGAAGGCT
AATTCAGCTGTCTAGCAACAGGCAAGAAAATGTATTCTGCGGGCTGGAGA
GATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAAGT
CATTTCCAGG
AGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATATTT
AATAGGGTTATTTGATTTTCTGGAGTCCATCTTCTTGAGTTCTTTATATA
TATTGGATATTAGTCCCCTATCTGATTTAGGATTGGTAAAGATCCTTTCC
CAATCTTTTGGTGGCCTTTTTTGTCTTATTGACAGTGTCTTTTGCCTTGT
AGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTCACTTTTACA
GTACAAGCCATTGCTGTTCTGTTTAAGAATTTTTCCCCTGTGCACATATC
TTCGAGGGTTTTCCCCACTTTCTCCTCTATAAGATTCAGTGTCTCTGGTT
TTATGTGGAGTTCTTTGATCCACTTAGACTTGAGCTTTGTACAGAGAGAT
AAGAATGGATCAATTCCCATTCTTCTACATGACAATCACCAGTTGTGCCA
GCACCATTTGTTGAAAATGCTGCCTTTTTTCCACTGGATGGTGTTAGCTC
CCTTGTCAAAGATTAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCT
TCAATTCTATTCCATTGGTCTACCTGTATATTTGCTGTACCAGTACCATG
CAGTTTTTATCACAATTGCTCTGTAGTACAGCTTGAGTTCAGGCATGGTG
GTTCCACCAGAGATTCTTTTATCCTTGAGAATAGTTTTTGCTATCCTAGT
TTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_g07.b1 MSMg01no520_g07.b1 CHROMAT_FILE:
MSMg01no520_g07.b1 PHD_FILE: MSMg01no520_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:26 2005
         (653 letters)



>mm_chr12_25261186_25262238
          Length = 1053

 Score = 1236 bits (639), Expect = 0.0
 Identities = 639/639 (100%)
 Strand = Plus / Minus

                                                                        
Query: 15   tcatatttcaccattaacaacaaaataaagatggctcattggttaagagtgcacaatgcc 74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 tcatatttcaccattaacaacaaaataaagatggctcattggttaagagtgcacaatgcc 994

                                                                        
Query: 75   cttgcacaggagtttgggacctgacactcacagtaggcagctcacaactctagctccagg 134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993  cttgcacaggagtttgggacctgacactcacagtaggcagctcacaactctagctccagg 934

                                                                        
Query: 135  gaatccaacttcttccagtttctgtactcatgtacagaaacgtgcctatacatcctcata 194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933  gaatccaacttcttccagtttctgtactcatgtacagaaacgtgcctatacatcctcata 874

                                                                        
Query: 195  tgcatacacataactaaaattacatagacctttgttaaaaaagataacaccaagtactct 254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873  tgcatacacataactaaaattacatagacctttgttaaaaaagataacaccaagtactct 814

                                                                        
Query: 255  tggattgactagcaatctgtttaaagcactgctagttatcaagtaataacaactgatgcc 314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813  tggattgactagcaatctgtttaaagcactgctagttatcaagtaataacaactgatgcc 754

                                                                        
Query: 315  taggaccaaccagttcaaatggccatccctgggcgtctgctgctggacaacgccaaagag 374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753  taggaccaaccagttcaaatggccatccctgggcgtctgctgctggacaacgccaaagag 694

                                                                        
Query: 375  aaggtgaacgcaggccacaccccagcactggtctgtggctgaaaccctaactgaatgcat 434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693  aaggtgaacgcaggccacaccccagcactggtctgtggctgaaaccctaactgaatgcat 634

                                                                        
Query: 435  ccgagccgctgggcttgagagtcaaaagtgacacacaggctggccttacatcctatgccc 494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633  ccgagccgctgggcttgagagtcaaaagtgacacacaggctggccttacatcctatgccc 574

                                                                        
Query: 495  agtatgatacaggtcaccagtgagtggcaactgaattactagaattccattaagaaccat 554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573  agtatgatacaggtcaccagtgagtggcaactgaattactagaattccattaagaaccat 514

                                                                        
Query: 555  caggcagaacggtataaaaaacccacacatggtgcacttgagagtgaaggctaattcagc 614
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513  caggcagaacggtataaaaaacccacacatggtgcacttgagagtgaaggctaattcagc 454

                                                   
Query: 615  tgtctagcaacaggcaagaaaatgtattctgcgggctgg 653
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 453  tgtctagcaacaggcaagaaaatgtattctgcgggctgg 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)