TTTTTTTTNGNNNTTNNTTNTTTTTTTTTNNTTTTTTTTTTTNTTNTTTT
TTTNTTTTTTTNGNTGTCNNTNNNNTNNNTTTTTTTTTTTNNNNNGGTCT
CNGNNNNNNGGCCTTAAAAATATTGCGGGCCGGCTAATACGGACTCCACT
ATNAGGGTGTTTTCAGCGNAATCCCGNCGGGNAAATTNCNNAGCAACATG
NAAGATAGGTGCTAGAGATATGAATTATTAGACCTCATGCATGCTGAACC
AGAAACCCAAGAAGGCCTAGTAACCTGCATTTTTTGGACTAATGACCATT
GTGAGNACACACTCAGCCTGAANAGCGCCTGAAGTGAAATGGCACTGTGG
GTCACACCACCTCCATGATTAAAGGAAATTTGGGAGCAAGTGATTACCCT
TCTGAAATGGGAAGAAAAGGAACAGGGGAATTTTTTTGGGGGGCACCTTT
TCTTTAACCCTTTCCGAAAAAAATGGGGGGGGGAAAAAAAACCTGGGGGG
GGTGGGGGGGTGTGGGGGGGNNNNNNNNNNNNNNNNNTNNTTTNNNNTTT
TTTTTNTTTTTGTTTNTTTTNTTTGTTTTNTTTTCGTCTTTTTGGTTCTT
GTTTTTTTTTTTTTTTCTTTTGGTTTTGTTTGTTCGTTTCCCTTTTCCTT
TCCTCTCTTTTG

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTATTTAGCTCTGTATCCCATTTTTAA
TAGGGTTATCTGATTCTCTGGAGTCTAACTTCTGGAGTTCTTTATATAAA
AACATGAAGTTCCTGTGCTTTGTGGAGTTTGTGTTTCTGCCCCCTTTCAT
CTTTCCTGCTGTTTTTCCCCTTGTTTTAGAGCATTTGTGTCAAGTTACAT
GGATTCAAAATAAGCAAAGCATTCAATTACGTAAAAGGAGAATGAGGAAA
ATTGCAGTGCCATATATACCCTGTAACCTCTAATAATTATGTCTGGATCA
GCTAACATACAAATTAAAATATGCGTGTTCTTGATATCTTCCTTATTCAC
AAAAGGAAATGATTACTACATTTTGTCAAACTAATGTCAATATGATGAGA
TGTTAGAACATTCTGCCAGCAGCTGCGCATTAGCCATATAAGGTAAGGCT
TTAATTATAGCTCCATCCTGCAGCAAAATGCCTAATTGGATTCATGTAAA
ATTTTACTTGAAGCAAGATTTTTTTCCCTGAAGATTTAAAGAATTAAGAA
AAGATTGTCTTTTCCCATTCACTGTTTTTTTGTTTGTTTTTTTGTTTTTT
TGCCTTGCGATCTTTGACCTTTAAATCTACACCCTGCTGTCTCTCCCTAT
TACAAGAACTAACAAAAAGAAATGTCTGTCTGTCTGTCAGTTGATACCTT
TCTGCCTGCCGTTTGGTTTTCATTN

Query= MSMg01no520_l04.g1 MSMg01no520_l04.g1 CHROMAT_FILE:
MSMg01no520_l04.g1 PHD_FILE: MSMg01no520_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:49 2005
         (689 letters)



>mm_chr12_45984660_45985749
          Length = 1090

 Score = 1228 bits (635), Expect = 0.0
 Identities = 674/691 (97%), Gaps = 10/691 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatttagctctgtatcccatttttaatagggttatctgattctctggagtctaacttc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 849 tttatttagctctgtatcccatttttaatagggttatttgattctctggagtctaacttc 790

                                                                       
Query: 61  tggagttctttatataaaaacatgaagttcctgtgctttgtggagtttgtgtttctgcc- 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 789 tggagttctttatataaaaacatgaagttcctgtgctttgtggagtttgtgtttctgcct 730

                                                                       
Query: 120 ccctttcatctttcctgctgtttttccccttgttttagagcatttgtgtcaagttacatg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ccctttcatctttcctgctgtttttccccttgttttagagcatttgtgtcaagttacatg 670

                                                                       
Query: 180 gattcaaaataagcaaagcattcaattacgtaaaaggagaatgaggaaaattgcagtgcc 239
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 669 gattcaaaataagcaaagcattcaattacctaaaaggagaatggggaaaattgcagtgcc 610

                                                                       
Query: 240 atatataccctgtaacctctaataattatgtctggatcagctaacatacaaattaaaata 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atatataccctgtaacctctaataattatgtctggatcagctaacatacaaattaaaata 550

                                                                       
Query: 300 tgcgtgttcttgatatcttccttattcacaaaaggaaatgattactacattttgtcaaac 359
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tgtgtgttcttgatatcttccttattcacaaaaggaaatgattactacattttgtcaaac 490

                                                                       
Query: 360 taatgtcaatatgatgagatgttagaacattctgccagcagctgcgcattagccatataa 419
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 489 taatgtcaatatgatgagatgttagaacattctgccagcagctgcacattagccatataa 430

                                                                       
Query: 420 ggtaaggctttaattatagctccatcctgcagcaaaatgcctaattggattcatgtaaaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 429 ggtaaggctttaattatagctccatcctgcagcaaaatgcctaattggactcatgtaaaa 370

                                                                       
Query: 480 ttttacttgaagcaagatttttttccctgaagatttaaagaattaagaaaagattgtctt 539
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttttacttgaagcaagattttttcccctgaagatttaaagaattaagaaaagattgtctt 310

                                                                       
Query: 540 ttcccattcactgtttttttgtttgtttttttgtttttttgccttgc-gatctttgacct 598
           ||||||||||||||||||||     |||||||   |||||||||||| ||||||||||||
Sbjct: 309 ttcccattcactgttttttt-----ttttttt---tttttgccttgctgatctttgacct 258

                                                                       
Query: 599 ttaaatctacaccctgctgtctctccctattacaagaactaacaaaaagaaatgtctgtc 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttaaatctacaccctgctgtctctccctattacaagaactaacaaaaagaaatgtctgtc 198

                                          
Query: 659 tgtctgtcagttgatacctttctgcctgccg 689
           |||||||||||||||||||||||||||||||
Sbjct: 197 tgtctgtcagttgatacctttctgcctgccg 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1090
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1080
Effective search space:   733320
Effective search space used:   733320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)