BAC Information

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BAC

Clone NameMSMg01-521B07
Chromosome12 (Build37)
Map Location 32,312,471 - 32,313,010
singlet/doubletsinglet
Overlap geneBcap29
Upstream geneLOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531
Downstream geneDus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg, 2010109K11Rik, LOC100043548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521B07.T7 (MSMg01no521_b07.b1)MSMg01-521B07.TJ (MSMg01no521_b07.g1)
ACCAG591959AG591960
length743743
length of high quality
(start - end)		634 (56 - 689)540 (83 - 622)
definitionCHROMAT_FILE: MSMg01no521_b07.b1 PHD_FILE: MSMg01no521_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:18 2005CHROMAT_FILE: MSMg01no521_b07.g1 PHD_FILE: MSMg01no521_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTAATAAATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAGAACTCTTCAGCTGGGGAACAGGGTACCCGTAAG
TATAGCTTTACAAGGTAAGTCTGGCCTTGAACTTTCTAACGAAATTCAAG
ACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTAAGTCTGGT
CTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGA
AATAGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAG
ACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTAAGTCTGGT
CTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGA
AATAGCTTTACAAGGTATGTTTGGCCTTGAACTTTCTCTAGTGTTAGGAG
CCTTTTTGTTCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGGCTGAAA
ATTCTGGATGAAATTCAGGGCAATCTATCAGAAGTAAAGCGGAGAGAGAG
AGTATGAGCAAAGAGGAAATATGGTACACAAAATAAGTATACAGGCCTTT
CCAAGGGTCTTGAACCTGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGG
AGAGAGATTAGAAGGAAGGAAAAGAAAAAAGATCAATTAGTGGAGGTCTC
CAGTAGGAGCCTATACTCATCACTAGATGAGCTCAAGGAGCCA

GAAAACAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTAGGTCAAGCTG
GCCTTGAACTCACAAAGCTGCATCTGCTTCTCCCTTCCGAGCACTAGGAT
TAAAAGCTCGCACCCACCACCCGGCTGCATAGTTAACTTTTGCATATGGA
TTACCTGGCAGCTGTGTGGTAACATGTTCTGCCTTGGAGATGGAGTTCCC
AGAGTCCATCGAGGTAAGAATAAACAGACATGTACAGATGCAAAGGGTAG
TTCACCTACTAGCACTAGCTAGTCCTTCCTCGGAATCTGGCTTCTCCCTT
TACCTGCACCTCACTGAAACAACAACTGTTTTATTATAAATTTCTTTTCC
TTTCTTTTCTTTTTAAAATTTTTCTTTCTTGCTCAAGTGAGGGTAAGCTG
GTTGGATAAATATAGCCAAAAGAATCCACTACAGTTACAGTCTCTTTTCT
TACACAGGTGACAGCTTTCGGTAAACATTTTGATACCTTTTAAAGAGTTG
AGGTTATTTCTTATTCTTTTACTTCACAGATACATTTGTCAAACTAAGAG
AGACAGAATGCCATTCCAAAGTTATTCATGTAGTTGGTAGCTCAGTAATT
ATCAGTTCTCTCTACTTCTTTACCCCTTTATTGTGCTGTTATATGGGCGA
AAGTTCAGTGCGCAATGCTAACTATAACAGACCATGACAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_b07.g1 MSMg01no521_b07.g1 CHROMAT_FILE:
MSMg01no521_b07.g1 PHD_FILE: MSMg01no521_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:18 2005
         (540 letters)



>mm_chr12_32312271_32313210
          Length = 940

 Score =  998 bits (516), Expect = 0.0
 Identities = 534/540 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgtaggtcaagctggccttgaactcacaaagctgcatctgcttctcccttccgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgtaggtcaagctggccttgaactcacaaagctgcatctgcttctcccttccgagc 260

                                                                       
Query: 61  actaggattaaaagctcgcacccaccacccggctgcatagttaacttttgcatatggatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 actaggattaaaagctcgcacccaccacccggctgcatagttaacttttgcacatggatt 320

                                                                       
Query: 121 acctggcagctgtgtggtaacatgttctgccttggagatggagttcccagagtccatcga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctggcagctgtgtggtaacatgttctgccttggagatggagttcccagagtccatcga 380

                                                                       
Query: 181 ggtaagaataaacagacatgtacagatgcaaagggtagttcacctactagcactagctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ggtaagaataaacagacatgtacagatgcaaagggtagttcacctaccagcactagctag 440

                                                                       
Query: 241 tccttcctcggaatctggcttctccctttacctgcacctcactgaaacaacaactgtttt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttcctccgaatctggcttctccctttacctgcacctcactgaaacaacaactgtttt 500

                                                                       
Query: 301 attataaatttcttttcctttcttttctttttaaaatttttctttcttgctcaagtgagg 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 attataaatttcttttcctttcttttcttttttaaatttttctttcttgctcaagtgagg 560

                                                                       
Query: 361 gtaagctggttggataaatatagccaaaagaatccactacagttacagtctcttttctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaagctggttggataaatatagccaaaagaatccactacagttacagtctcttttctta 620

                                                                       
Query: 421 cacaggtgacagctttcggtaaacattttgataccttttaaagagttgaggttatttctt 480
           ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacaggtgacagctttcagtagacattttgataccttttaaagagttgaggttatttctt 680

                                                                       
Query: 481 attcttttacttcacagatacatttgtcaaactaagagagacagaatgccattccaaagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attcttttacttcacagatacatttgtcaaactaagagagacagaatgccattccaaagt 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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