NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTTAATGGGGTTATTTGA
TTTTCTGGAGTCCACCTTCTTGACTTCTTTATATATATTGGATATTAGTC
CCCTATATGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGAC
CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTCTGCAGTTT
CATGAGGTCCCATTTGTCAATTTTCGATCTTAGAGCACAAGCCATTACTG
TTCTATTCAGGAACAAATAATACTTTAAAGCATAATAATATAAACTACAA
AGTTCATCTCTCTCTCTCTCACTCTCTCTCTCTCTCCCCCTCCCTATGCA
TTCATATGTTACAAATGTAGCCATAGATATACATGCACACATAATGTACT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTCTCTATCTATCTTTCTTTCTTTCTTTCTATCTATCTATCTACAC
ATACATTTAATAAAAATGGTCCATTGGTTTTGTCAATTTAAACACTGAGA
TTTGGGACACACGTTGCTAGTAAATAATATACATTCTAACAACACATATA
TTATCTTAGTGTAAAGTCATTGATCAACTTTGACATTTGNTATCTTTCAT
TTTAGCATTGGCGGGAAATCCAGTGTCATATTCTACTTTTCAACTTTGTC
TCAGTGAGAGTAAATGGA

NNCCCATGCTAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTGTAGTTCTGTACCTCATTT
TTTTAAATTGAGTTATTTGGTTTGTTGAGTCTTAACTTTTAGTGTTCTTT
ATATATTTTGGATATTAGTCTCCTGTCTGATTTAGGGTTAATGAAGATCT
TTTCCTGATCTATAAGCTGAAGTGTTGTCCTATTGACAGTGATCTTTGCT
TTACAAAGGCTTGTCAGTTTCATGGCATCCTACTTATCAATTGTTTATCT
TAGAGCCTGAGTCATCTGTGTTCTATTCAGGATATTGGCTCCTTTGCCAA
AGAGCTCAAGACAATATCACACTTCCTCTTCTATAACATTTGGTGTATCT
TGTCTTATGTTTATGTCCTTGATCCACTTGGATTTGAATTTTGTGCTTTG
TTCTACATGCAGACATCCACATAGGCCAGTGTTATTACTTGAAGATGCTT
TCTTTTTTTTCCAATTGTGTAAAAAATACCTCAAAGAAATCAATAGCTTT
CTTTTATATAAATGATAAATGGACAAAGAAGGAAATTTAGGAAAACAACA
CCCTTCAAATAATAGAAAATATATTGGTGGAATTCTAACCACACAAGTGA
AAGATGTGCATGACATGTACTTCTATGAAGTGCTTTGTCTGAAAGAAGGT
ATTGATGAAGATATCCGAAGATGGANGGATTACAGAGTAAAATGGCCATC
TTATCAAATTCATGAAATCCTA

Query= MSMg01no521_e20.b1 MSMg01no521_e20.b1 CHROMAT_FILE:
MSMg01no521_e20.b1 PHD_FILE: MSMg01no521_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:35 2005
         (610 letters)



>mm_chr12_63338733_63339742
          Length = 1010

 Score =  893 bits (462), Expect = 0.0
 Identities = 554/640 (86%), Gaps = 86/640 (13%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtttagctctgagccccatttttttaatggggttatttgattttctggagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gaattctttgtttagctctgagccccatttttttaatggggttatttgattttctggagt 282

                                                                       
Query: 65  ccaccttcttgacttctttatatatattggatattagtcccctatatgatttaggatagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ccaccttcttgacttctttatatatattggatattagtcccctatatgatttaggatagg 342

                                                                       
Query: 125 taaagatcctttcccaatctgttggtgacctttttgtcttattgacggtgtcttttgcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 taaagatcctttcccaatctgttggtgacctttttgtcttattgacggtgtcttttgcct 402

                                                                       
Query: 185 tgcagaagctctgcagtttcatgaggtcccatttgtcaattttcgatcttagagcacaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgcagaagctctgcagtttcatgaggtcccatttgtcaattttcgatcttagagcacaag 462

                                                                       
Query: 245 ccattactgttctattcaggaacaaataatactttaaagcataataatataaactacaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ccattactgttctattcaggaacaaataatactttaaagcataataatataaactacaaa 522

                                                                       
Query: 305 gttcatctctctctctctc--actctctctctctctc----------------------- 339
           |||||||||||||||||||  ||||||||||||||||                       
Sbjct: 523 gttcatctctctctctctctcactctctctctctctctctctctctctctctctctctct 582

                                                                       
Query: 340 ---------cccctccctatgcattcatatgttacaaatgtagccatagatatacatgca 390
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctctctctccccctccctatgcattcatatgttacaaatgtagccatagatatacatgca 642

                                                                       
Query: 391 cacataatgtactatctatctatctatctatctatctatctatctatctatctatctatc 450
           |||||||||||||||||||||||||||||||||||||                       
Sbjct: 643 cacataatgtactatctatctatctatctatctatct----------------------- 679

                                                                       
Query: 451 tatctatctctctatctatctttctttctttctttctatctatctatctacacatacatt 510
                                        |||||||||||||||||||||||||||||||
Sbjct: 680 -----------------------------ttctttctatctatctatctacacatacatt 710

                                                                       
Query: 511 taataaaaatggtccattggttttgtcaatttaaacactgagatttgggacacacgttgc 570
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 taataaaaatggtccattggttttgtcaatttaaacactgagatttgggacacacgttgc 770

                                                   
Query: 571 tagtaaataatatacattctaacaacacatatattatctt 610
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tagtaaataatatacattctaacaacacatatattatctt 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)