Query= MSMg01no521_l16.b1 MSMg01no521_l16.b1 CHROMAT_FILE:
MSMg01no521_l16.b1 PHD_FILE: MSMg01no521_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:09 2005
(611 letters)
>mm_chr12_73451462_73452472
Length = 1011
Score = 957 bits (495), Expect = 0.0
Identities = 562/609 (92%), Gaps = 41/609 (6%)
Strand = Plus / Plus
Query: 5 gaattctgtgagccttttccctgatgtttgaattaatgtgaatttgttaacttccactga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgagccttttccctgatgtttgaattaatgtgaatttgttaacttccactga 264
Query: 65 ggattcttttgaaagcgttcttatttactgtccatgaaactgtctgaacttcttattctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggattcttttgaaagcgttcttatttactgtccatgaaactgtctgaacttcttattctt 324
Query: 125 ggtaacaaatgactgcaaaatacaaaacaaatctttattgctgccatttccattgtttta 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 ggtaacaaatgactgcaaaatacaaaacaaatctttattgctgccattcccattgtttta 384
Query: 185 tgagcgagttctataagcacagagaaaaagaacacacacacacacacacacacacacaca 244
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 tgagcgagttctataatcacagagaaaaagaacacacacacac----------------- 427
Query: 245 cacacacacacacaccagcaaccatctagggatctcagttccactggtaatgtacttttc 304
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ---------------cagcaaccatctagggatctcagttccactggtaatgtacttttc 472
Query: 305 tgtaccatggggaaatcaacactaatccctaaacagagaacctgtgtaatctactaagaa 364
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 473 tgtaccatggagaaatcaacactaatccctaaacagagaatctgtgtaatctactaagac 532
Query: 365 aagatggcatggacctgacaagcttagaagccagagcgtcctttctctgtaggtcttccg 424
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 533 -----ggcatggacctgacaatcttagaagccagagcgtcctttctctgtaggtcttccg 587
Query: 425 aagtctagcaaccagac--cctacagtttagtgctcagaggctgttcctcagaacaggca 482
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aagtctagcaaccagacaccctacagtttagtgctcagaggctgttcctcagaacaggca 647
Query: 483 gagtcaggtgcctacgtgccaggttactggaggtatttcagaatgtcccgatgtcactaa 542
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 g--tcaggtgcctacgtgccaggttactggaggtatttcagaatgtcccgatgtcactaa 705
Query: 543 ttacctgccctgactcggtctctgactcaggctgaaagcttattattagagtcctttatc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ttacctgccctgactcggtctctgactcaggctgaaagcttattattagagtcctttatc 765
Query: 603 tggctcaac 611
|||||||||
Sbjct: 766 tggctcaac 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_l16.g1 MSMg01no521_l16.g1 CHROMAT_FILE:
MSMg01no521_l16.g1 PHD_FILE: MSMg01no521_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:09 2005
(639 letters)
>mm_chr12_73626093_73627131
Length = 1039
Score = 1236 bits (639), Expect = 0.0
Identities = 639/639 (100%)
Strand = Plus / Minus
Query: 1 attaagaaccaatactttactcactgagagctttttctttaaggtcacttaaataaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 attaagaaccaatactttactcactgagagctttttctttaaggtcacttaaataaaaat 780
Query: 61 gttagagctggcattgtgaaggtttatctctggtaaaggagaagttattttatttttagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gttagagctggcattgtgaaggtttatctctggtaaaggagaagttattttatttttagc 720
Query: 121 ctccttttgattaaacctggtggtcaacactgataaggcccgccccgagaaatggttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ctccttttgattaaacctggtggtcaacactgataaggcccgccccgagaaatggttctg 660
Query: 181 aagatggagtgccgggcctactcagcctgcaatcacaaacaattaggggaaaatgtagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aagatggagtgccgggcctactcagcctgcaatcacaaacaattaggggaaaatgtagca 600
Query: 241 agcacttcattcccttctctaggctgcatggcaaattgcatttaacatttcaggcttgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 agcacttcattcccttctctaggctgcatggcaaattgcatttaacatttcaggcttgtt 540
Query: 301 gcattttaaaataaggtctcaaactcagcaatttccaagacaacttcaatcaagagatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gcattttaaaataaggtctcaaactcagcaatttccaagacaacttcaatcaagagatat 480
Query: 361 tgcttaaatttttgttattactatagaaatgaaaagggtgattgtctgtgtgattagcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgcttaaatttttgttattactatagaaatgaaaagggtgattgtctgtgtgattagcct 420
Query: 421 cggagattgctttgggaagagtttggcagttctagtaacatgtctattatcatttacaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cggagattgctttgggaagagtttggcagttctagtaacatgtctattatcatttacaat 360
Query: 481 ttgggtagaattgaatcctacattggctctcaggacagttttataagagtccctctttat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttgggtagaattgaatcctacattggctctcaggacagttttataagagtccctctttat 300
Query: 541 ttgctaattttattccatattttaacataaaagagggaatccttgtaatgtgttaatgtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttgctaattttattccatattttaacataaaagagggaatccttgtaatgtgttaatgtg 240
Query: 601 tagataatgtactttttaatcgtgatttaaaaaacattc 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tagataatgtactttttaatcgtgatttaaaaaacattc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
