BAC Information

Click to search

BAC

Clone NameMSMg01-522I04
Chromosome12 (Build37)
Map Location 64,881,563 - 65,037,636
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665741, EG382606
Downstream geneLOC435302, EG623046, LOC623123, LOC217645, LOC217647, Gm527
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522I04.T7 (MSMg01no522_i04.b1)MSMg01-522I04.TJ (MSMg01no522_i04.g1)
ACCAG593050AG593051
length757743
length of high quality
(start - end)		657 (51 - 707)577 (80 - 656)
definitionCHROMAT_FILE: MSMg01no522_i04.b1 PHD_FILE: MSMg01no522_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:07 2005CHROMAT_FILE: MSMg01no522_i04.g1 PHD_FILE: MSMg01no522_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,036,984 - 65,037,636)(64,881,563 - 64,882,139)
sequence
TTCGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTATTATCTAATCACTTCTCTAAAGCCCCAACTAAGCCTT
CAATACGTGAGTCTTTGGACTCTTTTTTTGAATGCTAGCTGCGATCATAG
TATTCTTAACTATTTAAACATTATTTTCTGATTTATAAATATCTCCTAAT
TTTTAATACATAACTAAAATACTTTTCTGAAATTAAACCAGAATTTCCTC
CCATGCAAACATCAGCGAAATGCTCACATTACAGTGATTAAAGTGCTTGT
ATATGGCCAAGAATTCTCTGTTCATGAATGTTCTTTCTCTCCTCCAAAAT
TTAGAAAGTAAAAGCTATAGAGATCTCAAACTTTCTTCCAGACATGTTGT
GTCCTTTGTGAGCTTTACAGCACGTTAATTGCTCTTGAACTGTTAGTCAT
TGCAAGTAACTCCCACTGTGGTCAATTATCAGGCAGGAGAACTCAGAACA
GTGGGGAAGATTACTCATTATGACTCTCTGATCAAGCCAAAAATATGAGA
GAGACACATAAATAAATGGGAATTTCATTTTGTGGACACAAAGTAAGCTT
TATATTAAAGTTCATAAATTCATAAGGACAATAATACTTAAAAGACTAAG
TGGCATAAAGAGTTTAGCATAAAGAAAGAGACAGAAGAGATGAGTACAAT
TTGTCAGAGCAATGTAGTCCTATATCTACCAGCTGCACACAATGACATGG
GTTAGTG

NNCCAGCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGAGACCTGAGATGGGAGA
GGTCTCCAGGAGGCAATGAGGTAACCTTAGCCCATATGCCTAACAGTGGG
GACATGGAACCTAAAGAGGCCACCTACTGTAGCCAGGCAGAATCCCCAGT
TGATGGATAAGTACATCAATACACCCATAGAACTTTTGACCTAAAATATC
TGCTGTCTACACTAGAATGAATGGTACAGTCTATAATAGGTCCCTTTCGA
AGAGGAAATATCCATGAGATTATGTGTTGAAAAATATAAGGAAATTAATA
TGGAGTTACAGAAATAAACAGAGAATTACTGTTTTGTGTAGTGGAGTATG
CTTCTGATAGCTTATACTAAAGCTCTTTTAGGGTCTATTACTTGAAATAA
TTATAGAGAGAAACTATATGAAGTAAAAACATCAGATTAACATAATTTGT
ATAAGGGAAAAAGATCTATTTGTAAAAGATGTCAAAATTTATTCTAAAAC
TCTAGTGCATTAGTCTGGGTTCTCTAGATTCACTGAAATTATGGATTGTC
TCAATATATTAAGGGGATTTATTGTAATGACCTACAATTGGCAGTCCAAC
TAACTCAAAAATGTGAGTGGGAAATTTGAGAATCTAGTAGTTGCTCAGAC
CCACAAGCCTAGTTGTTTCAGAGGATCTTCTGTAAAAGGTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_i04.b1 MSMg01no522_i04.b1 CHROMAT_FILE:
MSMg01no522_i04.b1 PHD_FILE: MSMg01no522_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:07 2005
         (657 letters)



>mm_chr12_65036780_65037836
          Length = 1057

 Score = 1239 bits (641), Expect = 0.0
 Identities = 650/653 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttattatctaatcacttctctaaagccccaactaagccttcaatacgtgagtct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gaattcttattatctaatcacttctctaaagccccaactaagccttcaatacgtgagtct 798

                                                                       
Query: 65  ttggactctttttttgaatgctagctgcgatcatagtattcttaactatttaaacattat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ttggactctttttttgaatgctagctgcgatcatagtattcttaactatttaaacattat 738

                                                                       
Query: 125 tttctgatttataaatatctcctaatttttaatacataactaaaatacttttctgaaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tttctgatttataaatatctcctaatttttaatacataactaaaatacttttctgaaatt 678

                                                                       
Query: 185 aaaccagaatttcctcccatgcaaacatcagcgaaatgctcacattacagtgattaaagt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 677 aaaccagaatttcctcccatgcaaacatcagcgaaatgctcacattacagtgattaaaat 618

                                                                       
Query: 245 gcttgtatatggccaagaattctctgttcatgaatgttctttctctcctccaaaatttag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcttgtatatggccaagaattctctgttcatgaatgttctttctctcctccaaaatttag 558

                                                                       
Query: 305 aaagtaaaagctatagagatctcaaactttcttccagacatgttgtgtcctttgtgagct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaagtaaaagctatagagatctcaaactttcttccagacatgttgtgtcctttgtgagct 498

                                                                       
Query: 365 ttacagcacgttaattgctcttgaactgttagtcattgcaagtaactcccactgtggtca 424
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 497 ttacagcacgttaattgctcttgaactgttagtcattgtaagtaactcccactgtggtca 438

                                                                       
Query: 425 attatcaggcaggagaactcagaacagtggggaagattactcattatgactctctgatca 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 437 attatcaggcaggagaactcagaacagtggggaagattactcattatgactccctgatca 378

                                                                       
Query: 485 agccaaaaatatgagagagacacataaataaatgggaatttcattttgtggacacaaagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agccaaaaatatgagagagacacataaataaatgggaatttcattttgtggacacaaagt 318

                                                                       
Query: 545 aagctttatattaaagttcataaattcataaggacaataatacttaaaagactaagtggc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aagctttatattaaagttcataaattcataaggacaataatacttaaaagactaagtggc 258

                                                                
Query: 605 ataaagagtttagcataaagaaagagacagaagagatgagtacaatttgtcag 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ataaagagtttagcataaagaaagagacagaagagatgagtacaatttgtcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no522_i04.g1 MSMg01no522_i04.g1 CHROMAT_FILE:
MSMg01no522_i04.g1 PHD_FILE: MSMg01no522_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:07 2005
         (577 letters)



>mm_chr12_64881363_64882339
          Length = 977

 Score = 1093 bits (565), Expect = 0.0
 Identities = 574/577 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagagacctgagatgggagaggtctccaggaggcaatgaggtaaccttagcccatatgc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ccagagacctgagatgggagaggtctccaggaggcaatgaggtgaccttagcccatatgc 260

                                                                       
Query: 61  ctaacagtggggacatggaacctaaagaggccacctactgtagccaggcagaatccccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaacagtggggacatggaacctaaagaggccacctactgtagccaggcagaatccccag 320

                                                                       
Query: 121 ttgatggataagtacatcaatacacccatagaacttttgacctaaaatatctgctgtcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgatggataagtacatcaatacacccatagaacttttgacctaaaatatctgctgtcta 380

                                                                       
Query: 181 cactagaatgaatggtacagtctataataggtccctttcgaagaggaaatatccatgaga 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 cactagaatgaatggtacagtctataataggtccctttcaaagaggaaatatccatgaga 440

                                                                       
Query: 241 ttatgtgttgaaaaatataaggaaattaatatggagttacagaaataaacagagaattac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 ttatgtgttgaaaaatataaggaaattaatatggagttacagaaataaacagagaattat 500

                                                                       
Query: 301 tgttttgtgtagtggagtatgcttctgatagcttatactaaagctcttttagggtctatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttttgtgtagtggagtatgcttctgatagcttatactaaagctcttttagggtctatt 560

                                                                       
Query: 361 acttgaaataattatagagagaaactatatgaagtaaaaacatcagattaacataatttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttgaaataattatagagagaaactatatgaagtaaaaacatcagattaacataatttg 620

                                                                       
Query: 421 tataagggaaaaagatctatttgtaaaagatgtcaaaatttattctaaaactctagtgca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tataagggaaaaagatctatttgtaaaagatgtcaaaatttattctaaaactctagtgca 680

                                                                       
Query: 481 ttagtctgggttctctagattcactgaaattatggattgtctcaatatattaaggggatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttagtctgggttctctagattcactgaaattatggattgtctcaatatattaaggggatt 740

                                                
Query: 541 tattgtaatgacctacaattggcagtccaactaactc 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 741 tattgtaatgacctacaattggcagtccaactaactc 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |