Query= MSMg01no522_j07.b1 MSMg01no522_j07.b1 CHROMAT_FILE:
MSMg01no522_j07.b1 PHD_FILE: MSMg01no522_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:13 2005
(620 letters)
>mm_chr12_12319881_12320900
Length = 1020
Score = 1044 bits (540), Expect = 0.0
Identities = 588/616 (95%), Gaps = 21/616 (3%)
Strand = Plus / Plus
Query: 5 gaattcaggccaaattttctatcacccacttcttaatggggagtgaggtcttcccttgac 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattcaggccaaattttctatcacccacttcttaatggggagtgaggtcttcctttgac 264
Query: 65 taaaggatttgagaggatgctaggaaggactgacatggagaaaggaggggctgggctgac 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 taaaggatttgagaggatgctaggaaggactgacatggagaaaggaggggctgggctggc 324
Query: 125 attctcctcagatgtttctatggagacctagcgagacccctccccactcaccatgacctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attctcctcagatgtttctatggagacctagcgagacccctccccactcaccatgacctc 384
Query: 185 ccccattacttagttaggagccctcataggcatctcctgatcagccctgctatatgcccc 244
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccccattacttagtcaggagccctcataggcatctcctgatcagccctgctatatgcccc 444
Query: 245 tttaatcccccaaatccaccccagatagtgcaccttaagtaaccctttctgggtgaccca 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttaatcccccaaatccaccccagatagtgcaccttaagtaaccctttctgggtgac--- 501
Query: 305 gctacaaagggtttgggtttgtttgtttgtttatttgtttgttttttcctccaacggtgc 364
||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 502 -----aaagggtttgggtttgtttgtttgttt------------tttcctccaatggtgc 544
Query: 365 tgcctccttgtggcacttctcagtattacgggacacaggaagaagagaaactagagtggg 424
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 545 tgcctccttgtggcacttctcagtattacaggacacaggaagaagagaaactagaggggg 604
Query: 425 cggagggagtactgccactgggagccagcagttcagctgcagtcccctgtcttttgggcc 484
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cagagggagtactgccactgggagccagcagttcagctgcagtcccctgtcttttgggcc 664
Query: 485 cctgtacacactgaggctctatgtgtgtgtctcctcctctggcttgtgaactaggagaag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cctgtacacactgaggctctatgtgtgtgtctcctcctctggcttgtgaactaggagaag 724
Query: 545 catatcaggggggtttggtaagccctgaggctgagtcagcctgtcttttcagccacctaa 604
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 catatcaggggg-tttggtaagccctgaggctgagtcagcctgtcttttcagccacctaa 783
Query: 605 gatgccaaccctctgg 620
||||||||||||||||
Sbjct: 784 gatgccaaccctctgg 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_j07.g1 MSMg01no522_j07.g1 CHROMAT_FILE:
MSMg01no522_j07.g1 PHD_FILE: MSMg01no522_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:13 2005
(607 letters)
>mm_chr12_12486294_12487300
Length = 1007
Score = 1062 bits (549), Expect = 0.0
Identities = 583/597 (97%), Gaps = 6/597 (1%)
Strand = Plus / Minus
Query: 17 tcagttgatg-aatgccgcccttggattgcctgtaggtaagtctgtacagtattttcttg 75
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 tcagttgatgaaatgccgcccttggattgcctgtaggtaagtctgtacagtattttcttg 948
Query: 76 attagtaattgataaggggggcaccagaggtggcatcaactctgagcaggtgagcctgag 135
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 947 attagtaattgataaggggggcaccagaggtggcatcaactctgagcaggtgagcctggg 888
Query: 136 tgctgtaagaaagtaggttgaacaagctatggggagcaaactagtaagcagtgttctttc 195
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 887 tgctgtaagaaagcaggttgaacaagctatggggagcaagctagtaagcagtgttctttc 828
Query: 196 atggtctctgtttcggttcctgccctgatttccctcagtcagtgatggactttgacctga 255
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 atggtctctgtttcagttcctgccctgatttccctcagtcagtgatggactttgacctga 768
Query: 256 aatgtataagccaagtaaatctcttcctacccaagttgtgtggtcatggcattcatcaga 315
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 767 aatgtataagccaagtaaatctcttcctacccaagttttgtggtcatggcattcatcaga 708
Query: 316 gcaacag-----aaactgggaccaagttgcggaccaatatttcaacagacacagaggaga 370
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 707 gcaacagaaaccaaactgggaccaagtcgcggaccaatatttcaacagacacagaggaga 648
Query: 371 catctcatgctcaaaccataaaacaatctcttaaaacactctggtccttaaggccttttg 430
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 catctcatgttcaaaccataaaacaatctcttaaaacactctggtccttaaggccttttg 588
Query: 431 aaaaagatgttttaatttttagtctttaattatgtgtatgtgtgtggaggaggagagtta 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aaaaagatgttttaatttttagtctttaattatgtgtatgtgtgtggaggaggagagtta 528
Query: 491 ttgtatgtgtgcctgtagtgcagtgtccacagaggccagaagagtgtgttggacatctct 550
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 527 ttgtatgtgtgcctgtagtgcagtgtccacagaggccagaagagtgtgttggatatctct 468
Query: 551 ggagttgtaggtggttgtgagccaccagacttgagttctgggaaccaaacccagttc 607
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggagttgtaggtggttgtgagccaccagacttgagttctgggaaccaaacccagttc 411
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
