Query= MSMg01no523_a08.b1 MSMg01no523_a08.b1 CHROMAT_FILE:
MSMg01no523_a08.b1 PHD_FILE: MSMg01no523_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:48 2005
(687 letters)
>mm_chr12_93927001_93928087
Length = 1087
Score = 1226 bits (634), Expect = 0.0
Identities = 667/682 (97%), Gaps = 8/682 (1%)
Strand = Plus / Minus
Query: 5 gaattcaaggataataccatgttctgcacaactcaataaaagtggagtgctgtgtgcaca 64
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 gaattcaaggagaataccatgttctgcacaactcaataaaagtggagtgctgtgtgaaca 622
Query: 65 tcaaatgctatcgccctcctcactgtatttgccttctcttccctttttcatatgctgtat 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaaatgctatctccctcctcactgtatttgccttctcttccctttttcatatgctgtat 562
Query: 125 acacaaccagctttttgacttatccagacttttgcaaagaacaccctatttcatgcctcg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacaaccagctttttgacttatccagacttttgcaaagaacaccctatttcatgcctcg 502
Query: 185 gtgctctcacagatatagtggatcctaactgaaatgccttctctcctctttcacttgggt 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 gtgctctcacagatatagtggatcctgactgaaatgccttctctcctctttcacttgggt 442
Query: 245 atatttttctctgaaggtttttctataaaacatacacattttcagctacatctgttttga 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtatttttctctgaaggtttttctataaaacatacacattttcagctacatctgttttga 382
Query: 305 aattattgagactattatgactttgtatcttgtttgtaagtttttctatttctcccccct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 aattattgagactattatgactttgtatcttgtttgtaagtttttctatttct-ccccct 323
Query: 365 agagtgccgtccacttaggaataagcttaacatttactttcatctttgtatttccagtac 424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agagtgccatccacttaggaataagcttaacatttactttcatctttgtatttccagtac 263
Query: 425 agagcacatataatagcccaatacatacttattaaagttagagtgag-------tttttt 477
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 262 agagcacatataatagcccaatacatacttattaaagttagagtgaggtttttttttttt 203
Query: 478 ttttgacctacaggatcatagagccttgcatatttatatgatcatggtgcactttagttg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttttgacctacaggatcatagagccttgcatatttatatgatcatggtgcactttagttg 143
Query: 538 tttctatacaaaatagtcaagacttctatgggaagagcagactcaaaatgatcttcatga 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tttctatacaaaatagtcaagacttctatgggaagagcagactcaaaatgatcttcatga 83
Query: 598 ggttggtaagattttagaagttgaaaaatagttacaaagtcaccctaaatatacaaagag 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 ggttggtaagattttagaagttgaaaaatagttacaaagtcaccctaaatatacaaagag 23
Query: 658 ggcaaaatgaacactagactga 679
||||||||||| ||||||||||
Sbjct: 22 ggcaaaatgaagactagactga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_a08.g1 MSMg01no523_a08.g1 CHROMAT_FILE:
MSMg01no523_a08.g1 PHD_FILE: MSMg01no523_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:48 2005
(662 letters)
>mm_chr12_93756011_93757072
Length = 1062
Score = 1224 bits (633), Expect = 0.0
Identities = 654/661 (98%)
Strand = Plus / Plus
Query: 1 agtttctagcaatggccccgtgcaagtacaaagcaccatacagccttactattcctgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttctagcaatggccccgtgcaagtacaaagcaccatacagccttactattcctgaga 260
Query: 61 tcaaagcacacatcattaaaagacagcaggcttcagctctgaaaatagcaagggggctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaagcacacatcattaaaagacagcaggcttcagctctgaaaatagcaagggggctgt 320
Query: 121 gatgcaagtgaagtttgaccctcttggaacctggctttaggaaccatttggacaaccagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgcaagtgaagtttgaccctcttggaacctggctttaggaaccatttggacaaccagt 380
Query: 181 ttagatactgttctttatgaatataatatggtttgaataaaagagattatttccttggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagatactgttctttatgaatataatatggtttgaataaaagagattatttccttggga 440
Query: 241 agtttgctattggatgagaagttggtactgttaacatgtctgtatgacaggaagggactc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtttgctattggatgagaagttggtactgttaacatgtctgtatgacaggaagggactc 500
Query: 301 tgcatgctatcaaaagtgtaatgtgaataacaagccaggcataagccctttacaatcgtg 360
|| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtatgctatcaaaactgtaacgtgaataacaagccaggcataagccctttacaatcgtg 560
Query: 361 tactgcctgcaagatatgctaatgtaatgttggcaccaagtttgtggcagtaaccaattg 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactgcctgcaagatatgctagtgtaatgttggcaccaagtttgtggcagtaaccaattg 620
Query: 421 ataactgatttgacttaaggccctctcccaggatccaatactgtttgggtgagcaagaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataactgatttgacttaaggccctctcccaggatccaatactgtttgggtgagcaagaac 680
Query: 481 cagagaaagatagcccagggatctaggagaaaacctaatcatcaaatgtagtggcaaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagagaaagatagcccagggatctaggagaaaacctaatcatcaaatgtagtggcaaaat 740
Query: 541 gactctaaaggtattttgctatgctcgtagatgagtggcttgttcaactatcatcagagg 600
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 741 gactctaaaggtattttgctatgctcgtagatgagtggcttgttcaattatcatcagagc 800
Query: 601 agcttcctcctacagctgatgggaacagatatagagaacccaagaagacattatgcagag 660
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 801 agcttcctcctacagctgatgggaacagatatagagaacccaagaagatattatgcagag 860
Query: 661 a 661
|
Sbjct: 861 a 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
