BAC Information

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BAC

Clone NameMSMg01-523C22
Chromosome12 (Build37)
Map Location 102,817,160 - 102,817,341
singlet/doubletsinglet
Overlap gene4932415G16Rik
Upstream geneRps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik, Mylf-ps
Downstream geneMtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523C22.T7 (MSMg01no523_c22.b1)MSMg01-523C22.TJ (MSMg01no523_c22.g1)
ACCAG593563AG593564
length771756
length of high quality
(start - end)		184 (41 - 224)660 (69 - 728)
definitionCHROMAT_FILE: MSMg01no523_c22.b1 PHD_FILE: MSMg01no523_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:01 2005CHROMAT_FILE: MSMg01no523_c22.g1 PHD_FILE: MSMg01no523_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAGGAATTGGGGCCGCTATACGACTACTATATTCAGAGGATCCGCGGAAT
TCAGGGTGAGTTTCAGCTACACAGTAAAAAGCTGTTTTGTTTGTTTCCAT
TGGAAAAAAAAACATGTAATACATATTTTGTTCCTCTCCCAAAATTCTTC
CAGATCCTACTTACAACTCTATTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACGCAGTGCG
TGTACATGTAAATAGGAAAATATAAAGAGACATACACACAGAAAGAGCGC
ATTTCTGTGTAGGAGTAAGTGCATGCTCTCCCAGTGAGGCCAGAAAAGGT
AGCCCAGTTAGGGGATCAGGATCCACAGGGAAGAAACAGATTCATGGTCA
GTCCCTGCCCCAGCTGTTGGTGAACCCACATGATGAGCAAGCTGCACATC
TGTCATATATAGGGGTGGGGGGGATAGGTCCAGCCCATGCATCATATATT
GGTTGGTGGTTCAGACTCTGAGAGCCCCCAATGGTGCAAGTTAGATGACA
CTGTTGGGCTTCCTGTAAAGTCCCTGTCCTCTTTGGGGCCCTCGAGCCTT
CCCCCAATTCTTCCAAAAGACTCCCTTAGTTCTGTATGATGTTTGGCTGG
GGTTCTCTATATCTGTTTTCAATGGGGAGGGAAGGGGAAGCTCTCACAGG
AAAGTTATGTTATGCTCCTGTCGGGGAACATATAAAAGGATCATTAATAA
TGGTCTGGGAGTGGGGATTGG

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXGAAAGTTTGGCTGGGTATAGTAGCCTGGGCTG
TCATTTGTTTCTCTTATTGTCTGCATAACATCTGTCCAGGATGTTCTGGC
TTTCATAGTCTCTGGTGAAAAGTCTGGTGTAATTCTAATAGGCCTGCCTT
TATATGTTACTTGATCTTTTTCCATTACTGCTTAGAATCTTTATGTAGTT
CATTTGTTGTTCTGATTATTATGTGTCAGGAGGAATTTCTTTTCTGGTCC
AGTCTATTTGGAGTTTGTATGCTTCTTGTATGTTCGTGGGCATCTCTTTC
TTTAGGTTTGGGAAGTGTTCTTCTATTATTTTGTTGAAGATATTTGTTGG
CCCTTTAAGTTGAAAATCTTCATCTCATCTATTCCTATTATCCGTAGGTT
TGGTCTTCTCATTGTCTCCTGGATTTCCTGGATGGTTTGACTGAGGATCT
TTTTGCATTTTACATTTTCTTTGATTGCTGTGCCCATCTTCTCTATAGAA
TCTTCCGAACCTGAGACTCTCTCTTCCATCTCTTGTATTCTGTTGATGAT
GCTTGCATCTATGCTTCCAGATTTCATTCCTAGGGTTTCTATCTGCAGGG
TTGCCTCACTTTGGGTTTTCTTTATTGTGTCTACTCCCCTTTTTAGGTCT
TGTATGGTTTTGTTCAATTCCATTACCTGTTTGGNTGTGTTTTCCTGTTT
TTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_c22.b1 MSMg01no523_c22.b1 CHROMAT_FILE:
MSMg01no523_c22.b1 PHD_FILE: MSMg01no523_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:01 2005
         (184 letters)



>mm_chr12_102816954_102817541
          Length = 588

 Score =  333 bits (172), Expect = 5e-96
 Identities = 178/182 (97%), Gaps = 4/182 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcagggtgagtttcagctacacagtaaaaagctgttttgtttgtttccattggaaa 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcagggtgagtttcagctacacagtaaaaagctgttttgtttgtttccattggaaa 266

                                                                       
Query: 67  aaaaaa----catgtaatacatattttgttcctctcccaaaattcttccagatcctactt 122
           ||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaaaaaaaaacatgtaatacatattttgttcctctcccaaaattcttccagatcctactt 326

                                                                       
Query: 123 acaactctattctctctctctctctctctctctctctctctctctctctctctctctctc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acaactctattctctctctctctctctctctctctctctctctctctctctctctctctc 386

             
Query: 183 tc 184
           ||
Sbjct: 387 tc 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 96
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 588
Length adjustment: 8
Effective length of query: 176
Effective length of database: 580
Effective search space:   102080
Effective search space used:   102080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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