BAC Information

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BAC

Clone NameMSMg01-523E19
Chromosome12 (Build37)
Map Location 28,156,695 - 28,264,261
singlet/doubletdoublet
Overlap genenone
Upstream geneTyki, LOC668731, 1700020D12Rik, Sox11
Downstream geneLOC100043009, LOC669327, 1110015M06Rik, Allc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523E19.T7 (MSMg01no523_e19.b1)MSMg01-523E19.TJ (MSMg01no523_e19.g1)
ACCAG593652AG593653
length726759
length of high quality
(start - end)		527 (72 - 598)628 (75 - 702)
definitionCHROMAT_FILE: MSMg01no523_e19.b1 PHD_FILE: MSMg01no523_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:10 2005CHROMAT_FILE: MSMg01no523_e19.g1 PHD_FILE: MSMg01no523_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,263,735 - 28,264,261)(28,156,695 - 28,157,322)
sequence
TAAATTAATXXXXXXXXXXXXXXXXXXXXXXXCTTTTTCGAAGAGGATCC
GCGGAATTCTATCTTTCACTGTGTCTGATCTAATTTCCTAGCTCTTCCAT
CCATTGCGCCTCTATCTTTTCTGTGAGGCTACAGAAGATGAATTGAAGCC
CTCTGGCACATCAAGGTCTTGAAAGTGCTCAAGGAAGGCACATAGCTATC
TCAGCATTTTCCTTTCTCTACGGTTCTCTTGATATCTATGTAATGGTGCT
TCTGAGTCCACTCATGCTCTCACACTTCCCCTGTCTTACTTTGCACGTTT
TTTTTTATTGTTCTCATAAATTCAGTGCCTAAGAGCTGACCAAAGTTCAA
CCTGGAGTGCCTTACCTGTGTTACATATAAAGAACCCATTTTGTACCAGA
GTTTTAGGTAAATACAAATGCCTTACACTACCAACATTGTCATGTCACCT
ACTAGATTGCACAGTCTCTGATAACCAGCCTATCTTAGTTTGCTCTTTGA
TGCTGTTACAAAAGCAACCAAAACTAACTTGTGGAGGAAAGGATTTATTT
GATTTACTGGCTATTGTCTATCATCAAAGGAAGTCAGGACAGAAACTCAA
GGCTAGAGACTAGAGAGAGACAGCAACTGATGCAGAAGACACGGAGGAGT
GCTGCTTACTGGAATGCTCCCATGGCTTGCTCAGACTGTTTTCTTATACA
ACCCAATTTTTCCAGGATGGTAGCAC

CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTCCCTTTTCACTCTGGAAGCTA
CATGCAAATCTTCCTGTCCACAGCCCTTGATCCCTGAGGGAGCCCCCTGG
AGAGCCCACAGGGATTCTTCAAGCAGAAAGGACCCAGATAAGACCAGAGG
CTCCTGTCTCATCACCATAAATGTGTCCAGAGGGATCTGTAGAAGTGGCT
TTTTGTACATCCTTACACGGAAGCTCTGTGCCCACTGGCAGGTTGAATGC
CCTGCCGTGCGTTTAGTTGCTTTGTTGAGAGGCACAGCATGCCAGACCTT
GGCACACCTAAGATCATCCCTTCCCTCATCTTCTTTTGGTACAATCTGGG
TAACTCTAAAATTTATATTGAATTTTCATTGTTTGGTGGAGCATGGGAAA
AAAGGAGTGCCTGGGGGTAGACAGATATAGCCAGGGATTAACAGCAAGGG
CAAGAAAGCCACTGCCCAGAGGAGTTGGGAGTGAAATGGCACATGGTTCT
CTTTAGGTTTCTGTCCTGAAGCTTATAAAGGCTCTTCCTCTGCTGCCCCA
GGCTCAGAAGACCCTGTCTTGCCCAAACCCTAGGGGATTCTCTTCATTCT
GATGAAAGTGGCAACATTACACAAAGCTTGTCAAACATGTGGCTGGTCAG
CTGGGCAGTAGACTTCTTGTGGGTTCCACGCCTGCATTCTGGCTCATAAA
CCAGATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_e19.b1 MSMg01no523_e19.b1 CHROMAT_FILE:
MSMg01no523_e19.b1 PHD_FILE: MSMg01no523_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:10 2005
         (527 letters)



>mm_chr12_28263653_28264579
          Length = 927

 Score = 1019 bits (527), Expect = 0.0
 Identities = 527/527 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctgatctaatttcctagctcttccatccattgcgcctctatcttttctgtgaggcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgtctgatctaatttcctagctcttccatccattgcgcctctatcttttctgtgaggcta 550

                                                                       
Query: 61  cagaagatgaattgaagccctctggcacatcaaggtcttgaaagtgctcaaggaaggcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cagaagatgaattgaagccctctggcacatcaaggtcttgaaagtgctcaaggaaggcac 490

                                                                       
Query: 121 atagctatctcagcattttcctttctctacggttctcttgatatctatgtaatggtgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atagctatctcagcattttcctttctctacggttctcttgatatctatgtaatggtgctt 430

                                                                       
Query: 181 ctgagtccactcatgctctcacacttcccctgtcttactttgcacgtttttttttattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ctgagtccactcatgctctcacacttcccctgtcttactttgcacgtttttttttattgt 370

                                                                       
Query: 241 tctcataaattcagtgcctaagagctgaccaaagttcaacctggagtgccttacctgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tctcataaattcagtgcctaagagctgaccaaagttcaacctggagtgccttacctgtgt 310

                                                                       
Query: 301 tacatataaagaacccattttgtaccagagttttaggtaaatacaaatgccttacactac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tacatataaagaacccattttgtaccagagttttaggtaaatacaaatgccttacactac 250

                                                                       
Query: 361 caacattgtcatgtcacctactagattgcacagtctctgataaccagcctatcttagttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 caacattgtcatgtcacctactagattgcacagtctctgataaccagcctatcttagttt 190

                                                                       
Query: 421 gctctttgatgctgttacaaaagcaaccaaaactaacttgtggaggaaaggatttatttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gctctttgatgctgttacaaaagcaaccaaaactaacttgtggaggaaaggatttatttg 130

                                                          
Query: 481 atttactggctattgtctatcatcaaaggaagtcaggacagaaactc 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atttactggctattgtctatcatcaaaggaagtcaggacagaaactc 83


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no523_e19.g1 MSMg01no523_e19.g1 CHROMAT_FILE:
MSMg01no523_e19.g1 PHD_FILE: MSMg01no523_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:10 2005
         (628 letters)



>mm_chr12_28156495_28157522
          Length = 1028

 Score = 1214 bits (628), Expect = 0.0
 Identities = 628/628 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtcccttttcactctggaagctacatgcaaatcttcctgtccacagcccttgatccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtcccttttcactctggaagctacatgcaaatcttcctgtccacagcccttgatccc 260

                                                                       
Query: 61  tgagggagccccctggagagcccacagggattcttcaagcagaaaggacccagataagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagggagccccctggagagcccacagggattcttcaagcagaaaggacccagataagac 320

                                                                       
Query: 121 cagaggctcctgtctcatcaccataaatgtgtccagagggatctgtagaagtggcttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaggctcctgtctcatcaccataaatgtgtccagagggatctgtagaagtggcttttt 380

                                                                       
Query: 181 gtacatccttacacggaagctctgtgcccactggcaggttgaatgccctgccgtgcgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtacatccttacacggaagctctgtgcccactggcaggttgaatgccctgccgtgcgttt 440

                                                                       
Query: 241 agttgctttgttgagaggcacagcatgccagaccttggcacacctaagatcatcccttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttgctttgttgagaggcacagcatgccagaccttggcacacctaagatcatcccttcc 500

                                                                       
Query: 301 ctcatcttcttttggtacaatctgggtaactctaaaatttatattgaattttcattgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcatcttcttttggtacaatctgggtaactctaaaatttatattgaattttcattgttt 560

                                                                       
Query: 361 ggtggagcatgggaaaaaaggagtgcctgggggtagacagatatagccagggattaacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtggagcatgggaaaaaaggagtgcctgggggtagacagatatagccagggattaacag 620

                                                                       
Query: 421 caagggcaagaaagccactgcccagaggagttgggagtgaaatggcacatggttctcttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caagggcaagaaagccactgcccagaggagttgggagtgaaatggcacatggttctcttt 680

                                                                       
Query: 481 aggtttctgtcctgaagcttataaaggctcttcctctgctgccccaggctcagaagaccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggtttctgtcctgaagcttataaaggctcttcctctgctgccccaggctcagaagaccc 740

                                                                       
Query: 541 tgtcttgcccaaaccctaggggattctcttcattctgatgaaagtggcaacattacacaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtcttgcccaaaccctaggggattctcttcattctgatgaaagtggcaacattacacaa 800

                                       
Query: 601 agcttgtcaaacatgtggctggtcagct 628
           ||||||||||||||||||||||||||||
Sbjct: 801 agcttgtcaaacatgtggctggtcagct 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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