BAC Information

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BAC

Clone NameMSMg01-523K11
Chromosome12 (Build37)
Map Location 40,331,274 - 40,331,460
singlet/doubletsinglet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523K11.T7 (MSMg01no523_k11.b1)MSMg01-523K11.TJ (MSMg01no523_k11.g1)
ACCAG593919AG593920
length907738
length of high quality
(start - end)
---192 (76 - 267)
definitionCHROMAT_FILE: MSMg01no523_k11.b1 PHD_FILE: MSMg01no523_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:38 2005CHROMAT_FILE: MSMg01no523_k11.g1 PHD_FILE: MSMg01no523_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCCATTAATTTGCTTTCCGATAAGACAACTCACTTTTCAGAGAGAAG
GAGTCCGCGGAATTCTTTCTTTCCCTTTAGAAAAAGATCCATAACCTGTG
AATTGAGTTCCATTATGTTTAATAGAGTGTAACGATTATTGTTGCTTCGA
TTACACTTCTGGCCCCGTGGACGCTTTGCTTATTGATCCACTGACCGTAT
TCACCCTCTTTGTTATGTCTTCTGTACACTGAAACATATTCATGTCCACA
TTTATTCTCTATAGGTAGAACACCTATACATACCTGTATAACGCTGACTC
ATTTTATTAAATACCCTGCTCTGTCTTCTTAACCTAACAAACGTAATTAA
GAGTTTTAATATCAATACCCCCTTTCTTGCCCACTATATTTCTTTTTTTT
ATAACCATGCGCCGCTTTTGTATTCCCAGAAACCTTCACCCCTCCCACCG
TTTACCTTTATTGCCGCCATAATTTTCCGTCTAATCCTCTCATACGCAAT
CTTATTTCAAGCTCGGCTATAATATCTCTCTAATATAATTCTTTTTATTA
ATATATAGTCACTCCTTAATGCCCCTATACATATCCCTATACATTTTATT
TCAGTTTAGGACAATTATATTGAGAGAAATCCATACGTTACTTGGAATAC
AATAATATACCATTTTGCGGGAATTATACAACCCACCCCCACTCTTTGCT
CCCACATTTAACTATTTTTTGCTTTGTGTTCAACCCTCTTTATTTTCTTA
CATTATTTTCTTTTATCCTCCCACTCCTTACGCCACCTCATTATATATTT
TTTTTATTCTGCGCTCACATCTCTCACTATTTTTTTTTATGCATGGATTG
ATAATGTCGTATCCCAGGTGCAGTGGCGGCTCGTGTACAATAATTATGAG
TAAATGA
CACTATGACAGTGGGAGGCCAGGAGGCCGCCTTTTCGACGAATGGAGGTG
AACTATAGATTTGCCCGCGGAATTCAACGAAAAATCTCAAATGCTACCTT
GAGAGGAGGAAATCTGACTTGTGTTAAACATCATTTGAATTTTGACAACT
TAATTGAACCACATGAAACTGAGAACAAAATGAGCAGCACTTCCATTAGA
TTGGAGCTTTTATAAAATGTTTCACTAGCAAATCTTTTCACATCTGAACT
CTGATTCACCTGCATGTCTTCAGAAACCAAGTTGTTCAATAAGATTTAAC
CAGGCTGCAATGTCAATAGGATGAATCTTTGATTTCTTATTGTGGTTTTC
TTGATAAGCAGTTATCTCTATTTCTTATCTTAATTTCTATTAAATATTAC
AAAGTAATACCATATACATAGTTCCCCCCATGTTTACTATTTACAAAAGG
ATGGCAACTTCATTAGTACTTTGCTTTTCTAGCTACTAGCTGGAAGATTT
TATTTTGGTGAGCTCAGGGTTTTAACTCTCTGATCAGACAGATTCATGTG
ATCAGAGTATGCAAAGAATGTTTAGGTGTCCCTTTTGTTCAGGAGGTACA
AGGGTTTCAGGCTCCCTGGCTTCCCGGGATGAAGGGACTTATTATTGAAA
GATTGTCTCCCAGTGGACTACCCTTTCATACGATGAATCCTGAAGGAACT
GGGTACCTATGTTCACTATCCATATCTTTTTAAGTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_k11.g1 MSMg01no523_k11.g1 CHROMAT_FILE:
MSMg01no523_k11.g1 PHD_FILE: MSMg01no523_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:38 2005
         (192 letters)



>mm_chr12_40331074_40331665
          Length = 592

 Score =  354 bits (183), Expect = e-102
 Identities = 186/187 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacgaaaaatctcaaatgctaccttgagaggaggaaatctgacttgtgttaaacatcatt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aacgaaaaatctcaaatcctaccttgagaggaggaaatctgacttgtgttaaacatcatt 328

                                                                       
Query: 61  tgaattttgacaacttaattgaaccacatgaaactgagaacaaaatgagcagcacttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgaattttgacaacttaattgaaccacatgaaactgagaacaaaatgagcagcacttcca 268

                                                                       
Query: 121 ttagattggagcttttataaaatgtttcactagcaaatcttttcacatctgaactctgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttagattggagcttttataaaatgtttcactagcaaatcttttcacatctgaactctgat 208

                  
Query: 181 tcacctg 187
           |||||||
Sbjct: 207 tcacctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)