BAC Information

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BAC

Clone NameMSMg01-523L14
Chromosome12 (Build37)
Map Location 117,093,860 - 117,094,545
singlet/doubletsinglet
Overlap geneIgh
Upstream geneEG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75
Downstream geneIghv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523L14.T7 (MSMg01no523_l14.b1)MSMg01-523L14.TJ (MSMg01no523_l14.g1)
ACCAG593973AG593974
length747751
length of high quality
(start - end)		690 (48 - 737)589 (79 - 667)
definitionCHROMAT_FILE: MSMg01no523_l14.b1 PHD_FILE: MSMg01no523_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:44 2005CHROMAT_FILE: MSMg01no523_l14.g1 PHD_FILE: MSMg01no523_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:44 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTGAGTCTGTATCCCATTTTTAATAGGTTATTTAATTT
TCTGGAGTCCAGCTTCTTGAGTTCTTTGTATATGTTGGATATTAGACCCC
CTACAAGCTTAAGATTGGTAAATATCCTTTCCTAATCTGTTACTGGCCTT
TTTTGTCATATTGACAATGTCTTTTGCCTTACAGAAGCTTTGCAATTTTA
TGAGGTCCCATTTATCAATCCTCAATCTTACATCACATAACATTTCTGTT
CTGTTCAGGAATTTCCCCCTGTGCCCATATCTTCGAGGCCTTTCCCCACT
TTCTCCTCTATGAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCATGGAC
TAACTGTAGGAAGAGTCTGAATCTGAGATAACTGCCATGAGATTGAGAAC
AGAATTATAGCAGAGAATTGGTATTTAAAGATTGGCTTGATGATGTCATG
AAGAGCAAGGAAAAGCATTATCTTTGATTGTAGTAACTGAGATTTTTCTG
TTGTGTCCATATTTAATTATGAGTGGAAAAGAAGTCTTTGTTCATGTTCT
GAGGTAATGGTTGAGCACTGACATATGTAATGCTCTCCACATATCCTTAC
CTGATTGTTGTCATTGCAGGAAAACAATGGAAGATAGATCAATAGAGCAA
TAGGCATCTGTCCAGAAATTACTGGTGACTCTACAACCAGGTTGTAC

NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
AAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGAT
AAGTTGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATT
TCCTATACACATGAAACTCTCAGAAAATGAAGACTGAAGTGTAGACACTA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_l14.b1 MSMg01no523_l14.b1 CHROMAT_FILE:
MSMg01no523_l14.b1 PHD_FILE: MSMg01no523_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:44 2005
         (690 letters)



>mm_chr12_117093656_117094745
          Length = 1090

 Score = 1326 bits (686), Expect = 0.0
 Identities = 686/686 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtttgagtctgtatcccatttttaataggttatttaattttctggagtcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtttgagtctgtatcccatttttaataggttatttaattttctggagtcca 264

                                                                       
Query: 65  gcttcttgagttctttgtatatgttggatattagaccccctacaagcttaagattggtaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcttcttgagttctttgtatatgttggatattagaccccctacaagcttaagattggtaa 324

                                                                       
Query: 125 atatcctttcctaatctgttactggccttttttgtcatattgacaatgtcttttgcctta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atatcctttcctaatctgttactggccttttttgtcatattgacaatgtcttttgcctta 384

                                                                       
Query: 185 cagaagctttgcaattttatgaggtcccatttatcaatcctcaatcttacatcacataac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagaagctttgcaattttatgaggtcccatttatcaatcctcaatcttacatcacataac 444

                                                                       
Query: 245 atttctgttctgttcaggaatttccccctgtgcccatatcttcgaggcctttccccactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttctgttctgttcaggaatttccccctgtgcccatatcttcgaggcctttccccactt 504

                                                                       
Query: 305 tctcctctatgagtttcagtgtctctggttttatgtggagttcatggactaactgtagga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctcctctatgagtttcagtgtctctggttttatgtggagttcatggactaactgtagga 564

                                                                       
Query: 365 agagtctgaatctgagataactgccatgagattgagaacagaattatagcagagaattgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agagtctgaatctgagataactgccatgagattgagaacagaattatagcagagaattgg 624

                                                                       
Query: 425 tatttaaagattggcttgatgatgtcatgaagagcaaggaaaagcattatctttgattgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatttaaagattggcttgatgatgtcatgaagagcaaggaaaagcattatctttgattgt 684

                                                                       
Query: 485 agtaactgagatttttctgttgtgtccatatttaattatgagtggaaaagaagtctttgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtaactgagatttttctgttgtgtccatatttaattatgagtggaaaagaagtctttgt 744

                                                                       
Query: 545 tcatgttctgaggtaatggttgagcactgacatatgtaatgctctccacatatccttacc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcatgttctgaggtaatggttgagcactgacatatgtaatgctctccacatatccttacc 804

                                                                       
Query: 605 tgattgttgtcattgcaggaaaacaatggaagatagatcaatagagcaataggcatctgt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgattgttgtcattgcaggaaaacaatggaagatagatcaatagagcaataggcatctgt 864

                                     
Query: 665 ccagaaattactggtgactctacaac 690
           ||||||||||||||||||||||||||
Sbjct: 865 ccagaaattactggtgactctacaac 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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