Query= MSMg01no524_l05.b1 MSMg01no524_l05.b1 CHROMAT_FILE:
MSMg01no524_l05.b1 PHD_FILE: MSMg01no524_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:03 2005
(687 letters)
>mm_chr12_99831799_99832885
Length = 1087
Score = 1266 bits (655), Expect = 0.0
Identities = 676/683 (98%)
Strand = Plus / Plus
Query: 5 gaattcaaggccagcctgatctacataatgagttcaagaacagccaagactacacgaaaa 64
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattcaaggccagcctgatctacataatgagttcaaggacagccaagactacacgaaaa 264
Query: 65 gaccttgtctcaaaaaataaaatgagaaaaataaaaatgagaaaagtttataagttcctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaccttgtctcaaaaaataaaatgagaaaaataaaaatgagaaaagtttataagttcctt 324
Query: 125 gagataattaaaccataccttgaatgacttgtgtgcattttaaaggtgttttaggttaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagataattaaaccataccttgaatgacttgtgtgcattttaaaggtgttttaggttaat 384
Query: 185 ttattttattttgtgtatctgagtgttttacacacacgtactcatgggtaccagtggttc 244
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 ttattttattttgtgtatctgagtgttttacacacaggtactcatgggtaccagtggttc 444
Query: 245 caacagtgaaatgtacatgatgtactgagatgtacatggatgatgggaagccaaactcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caacagtgaaatgtacatgatgtactgagatgtacatggatgatgggaagccaaactcag 504
Query: 305 gtcataaactcagttcataaacttttatgacaagctctttaccacccaagccatcccccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcataaactcagttcataaacttttatgacaagctctttaccacccaagccatcccccc 564
Query: 365 aacccccaatgtaatgaacgtctatgtgccccaaaacacattttcaagaaagttgtcaac 424
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 565 aacccccaatgtaatgaacgtctatgtgccccaaaacacattttcaagagagttgtcaac 624
Query: 425 acataactgctccagctttataattctctccttcatgtctttactaatatgttattttga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acataactgctccagctttataattctctccttcatgtctttactaatatgttattttga 684
Query: 485 acctggtgccagatatcatatggttccattcataaatacttcaaaaaacttctaagatat 544
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 accaggtgccagatatcatatggttccattcataaatacttcaaaaaacttctaagatat 744
Query: 545 aattccttataaacataatcataataccttacttcacttttaaattaacaaaatatcttt 604
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 745 aattccttacaaacataatcataataccttatttcacttttaaattaacaaaatatcttt 804
Query: 605 agcagcatcagcctctcctgccgcagactcttgttaaaaaataaaatgtaaatattaaat 664
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 805 agcagcatcagcctctcctgccacagactcttgttaaaaaataaaatgtaaatattaaat 864
Query: 665 agaacagaatacataaatgtgag 687
|||||||||||||||||||||||
Sbjct: 865 agaacagaatacataaatgtgag 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_l05.g1 MSMg01no524_l05.g1 CHROMAT_FILE:
MSMg01no524_l05.g1 PHD_FILE: MSMg01no524_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:03 2005
(648 letters)
>mm_chr12_99980176_99981218
Length = 1043
Score = 1075 bits (556), Expect = 0.0
Identities = 572/580 (98%), Gaps = 5/580 (0%)
Strand = Plus / Minus
Query: 69 agccaggatgtctgggttggagtgcagcttggccactctctgagacctccggtgaggagc 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 agccaggatgtctgggttggagtgcagcttggccactctctgagacctccggtgaggagc 984
Query: 129 tgcttttctttgtacctcatctgtcgcacagatatgatagttttccccttcagaaagttc 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 tgcttttctttgtacctcatctgtcgcacagatatgatagttttccccttcagaaagttc 924
Query: 189 ttataaggttgaggtaagttaatatttgtgaagcatttcgggctgcgcctggctcacagc 248
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 923 ttataaggttgaggtaagttaatatttgcgaagcatttcgggctgcgcctggctcacagc 864
Query: 249 ggggctatgtttgttgattaaaaattcaatgcctgcactggagccagacactgtgtttgg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ggggctatgtttgttgattaaaaattcaatgcctgcactggagccagacactgtgtttgg 804
Query: 309 agccagagcacagatgagcaggaccaagtctctgtgctcatcacacagttcaaaagccgg 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 agccagagcacagatgagcaggaccaagtctctgtgctcatcacacagttcaaaagccgg 744
Query: 369 gtaagttgttttttcttttcccctactctttttacccaccattccatagccaagaacagg 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtaagttgttttttcttttcccctactctttttacccaccattccatagccaagaacagg 684
Query: 429 aacatatattttttttttaccattattgtaccttaaacaaattggcattcaacaatttag 488
||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 683 aacat-----tttttttaaccattattgtaccttaaacagattggcattcaacaatttag 629
Query: 489 ttactattggaaaaatcttgtgtgaaaaaacaagccaagaaccttttcattaaaagatat 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttactattggaaaaatcttgtgtgaaaaaacaagccaagaaccttttcattaaaagatat 569
Query: 549 tcagaggcctggagagatggctcagtcagaaaagtgtttgtacgtaaagaataaccctag 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tcagaggcctggagagatggctcagtcagaaaagtgtttgtacgtaaagaataaccctag 509
Query: 609 tacccacatgagaaagccaagcatggcatttggtgcctgt 648
||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tacccacatgagaaagccaagcatggcatttggtgcctgt 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1043
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1033
Effective search space: 659054
Effective search space used: 659054
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
