BAC Information

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BAC

Clone NameMSMg01-524L15
Chromosome12 (Build37)
Map Location 78,499,728 - 78,608,012
singlet/doubletdoublet
Overlap geneFut8
Upstream geneHspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772
Downstream geneLOC230765, LOC666659, EG626215, Gphn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524L15.T7 (MSMg01no524_l15.b1)MSMg01-524L15.TJ (MSMg01no524_l15.g1)
ACCAG594735AG594736
length781762
length of high quality
(start - end)		585 (39 - 623)563 (67 - 629)
definitionCHROMAT_FILE: MSMg01no524_l15.b1 PHD_FILE: MSMg01no524_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:05 2005CHROMAT_FILE: MSMg01no524_l15.g1 PHD_FILE: MSMg01no524_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,499,728 - 78,500,309)(78,607,694 - 78,608,012)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
CAGCTTTTGGTGTATTCAACATCTTATTGTAAAAGTTCCCCAGAAGTTAG
AAGTGATACTACAATTCTAAAACTGATTATGTCATACATATGTTTTAATG
AAAAATCTTAAATCATACTCTCACATGCCCTGTGATCAGTTAAAGCAGAA
TGATCTCACTACAATGCTGAGAAGATTTTAACAGTTAAATTGACATTTGA
ACCAAGACCCTTAAAGAAATCGCAAAAAACATTCATTGTGAATCCAAACA
ATGTGACTACTTCATAAAATAGAAAATGCAAGTAGAAAGTAGAGTCTCAT
CATACCAAGAACCAGGAAAAATCTCAATTTAAATGATGAATGATAATCAG
CAGACACCACAAGAGACAGCACAGGTGTTGGAATTGTCTTACAAAGATTT
TACAAAAACTGTAATACTACAAACTCTCCAGTAGCAATTAGAGGCTTTAA
AGAAGTGAAAAAATATAGAAAGCCTCAGCAAAGAAATAGATGATAGAAGA
AAAAATTGAGTGGAAATGTTAATAGTGAAAACACAGTGACTTCCAGTGCT
CTGTACTATGGCTGTTGCGGAGAAGAGAACTGGTGCACTGGAGGCTAAGG
CAATAAAGTTCAGCCACTTGAGCCGCAGTGAGTGAAGACTAAAGGGGTTA
GCAGACACCTANGGGCATTTTGGACAGGAACAAAACATCTTTTTATTTTC
TTCCTTGAAAGCCAGAAGAGAAAATGGGATG

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTATATTCAAGCTCTCCGTCCTGGGGTAAATGTCC
TCCTAGGGCTCTCAGCTCTCTGCACCTAAGACAAAGTTCTTAAAAGGTCC
CGCAGCTATGGGATTGACTCCTGCACCCCCATTTGTTTCTGTGGTGGTTT
GAATAGGTTTGGCCACCATAGATTCATGTGTTTGAAATATTTGATCCATA
GGGAGTGGCGCTAATTAGGAGATTTGGTCTTGTTGGGAATAGGTGTGGCC
TTGTTGAAGGAAGTGTGTCACTGTGGGGGTGGGTTTTGAGGTCTCCTCCT
ATGCTCAGGCTCTGCCCAGTGTGGATAAGCGCCTCTTCTTGGCCGCCTGT
GGAAGACAGTCTCCTCTTGGTTGCCTTCAGATCAATATGTAGAACTCTTG
GCTCTTCCAGCACCATATCTACCTGCATGATGTCATGCGTCCTACCGTGA
TGATAATGGACTGAACCTCTGAAACTGTAAGCCAGCCCATATTAAATGTT
TCCTTTAAAAGAGTTGCCATGATCATGGTGTCTCTTCACTGCCATAAAAT
ATTAAGACTATCTCCTTCCAGACTTTAGAAGAAAACCTCACACCATTCAC
ATTCTCAACACCTACGGAGCTCTCTTTCAGTGAGCTGCTGGGCCTTGAGA
CTCAAGTCCTCATGACATGAATCACATCAGTGGTATGACTACTGCCTGCC
AAGTACATTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_l15.b1 MSMg01no524_l15.b1 CHROMAT_FILE:
MSMg01no524_l15.b1 PHD_FILE: MSMg01no524_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:05 2005
         (585 letters)



>mm_chr12_78499525_78500509
          Length = 985

 Score = 1087 bits (562), Expect = 0.0
 Identities = 577/582 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcagcttttggtgtattcaacatcttattgtaaaagttccccagaagttaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcagcttttggtgtattcaacatcttattgtaaaagttccccagaagttaga 263

                                                                       
Query: 64  agtgatactacaattctaaaactgattatgtcatacatatgttttaatgaaaaatcttaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgatactacaattctaaaactgattatgtcatacatatgttttaatgaaaaatcttaa 323

                                                                       
Query: 124 atcatactctcacatgccctgtgatcagttaaagcagaatgatctcactacaatgctgag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 324 atcatactctcacatgccctgtgatcagttaaagcagaatgatctcactacaatgctgaa 383

                                                                       
Query: 184 aagattttaacagttaaattgacatttgaaccaagacccttaaagaaatcgcaaaaaaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagattttaacagttaaattgacatttgaaccaagacccttaaagaaatcgcaaaaaaca 443

                                                                       
Query: 244 ttcattgtgaatccaaacaatgtgactacttcataaaatagaaaatgcaagtagaaagta 303
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 ttcattgtgaatccaaacaatgtgactacttcataaaatagaaaatgcaaatagaaagta 503

                                                                       
Query: 304 gagtctcatcataccaagaaccaggaaaaatctcaatttaaatgatgaatgataatcagc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gagtctcatcataccaagaaccaggaaaaatctcaatttaaatgatgaatgataatcagc 563

                                                                       
Query: 364 agacaccacaagagacagcacaggtgttggaattgtcttacaaagattttacaaaaactg 423
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 564 agacaccacaagagacagcacaggtgttggaattgtcttataaagattttacaaaaactg 623

                                                                       
Query: 424 taatactacaaactctccagtagcaattagaggctttaaagaagtgaaaaaatatagaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taatactacaaactctccagtagcaattagaggctttaaagaagtgaaaaaatatagaaa 683

                                                                       
Query: 484 gcctcagcaaagaaatagatgatagaagaaaaaattgagtggaaatgttaatagtgaaaa 543
           |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 684 gcctcagcaaagaaatagatgatagaagaaaaaactgagtggaaatgttagtagtgaaaa 743

                                                     
Query: 544 cacagtgacttccagtgctctgtactatggctgttgcggaga 585
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cacagtgacttccagtgctctgtactatggctgttgcggaga 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no524_l15.g1 MSMg01no524_l15.g1 CHROMAT_FILE:
MSMg01no524_l15.g1 PHD_FILE: MSMg01no524_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:05 2005
         (563 letters)



>mm_chr12_78607690_78608652
          Length = 963

 Score =  609 bits (315), Expect = e-178
 Identities = 318/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatattcaagctctccgtcctggggtaaatgtcctcctagggctctcagctctctgcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tatattcaagctctccgtcctggggtaaatgtcctcctagggctctcagctctctgcacc 264

                                                                       
Query: 61  taagacaaagttcttaaaaggtcccgcagctatgggattgactcctgcacccccatttgt 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 263 taagacaaagttcttaaaaggtcccgcagctatgggattgagtcctgcacccccatttgt 204

                                                                       
Query: 121 ttctgtggtggtttgaataggtttggccaccatagattcatgtgtttgaaatatttgatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttctgtggtggtttgaataggtttggccaccatagattcatgtgtttgaaatatttgatc 144

                                                                       
Query: 181 catagggagtggcgctaattaggagatttggtcttgttgggaataggtgtggccttgttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 catagggagtggcgctaattaggagatttggtcttgttgggaataggtgtggccttgttg 84

                                                                       
Query: 241 aaggaagtgtgtcactgtgggggtgggttttgaggtctcctcctatgctcaggctctgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  aaggaagtgtgtcactgtgggggtgggttttgaggtctcctcctatgctcaggctctgcc 24

                              
Query: 301 cagtgtggataagcgcctc 319
           |||||||||||||||||||
Sbjct: 23  cagtgtggataagcgcctc 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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