BAC Information

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BAC

Clone NameMSMg01-524O08
Chromosome12 (Build37)
Map Location 28,744,800 - 28,745,269
singlet/doubletsinglet
Overlap genenone
Upstream geneSox11, LOC100043009, LOC669327
Downstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524O08.T7 (MSMg01no524_o08.b1)MSMg01-524O08.TJ (MSMg01no524_o08.g1)
ACCAG594864AG594865
length734741
length of high quality
(start - end)
662 (42 - 703)622 (71 - 692)
definitionCHROMAT_FILE: MSMg01no524_o08.b1 PHD_FILE: MSMg01no524_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:18 2005CHROMAT_FILE: MSMg01no524_o08.g1 PHD_FILE: MSMg01no524_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTGTT
CAGGAATCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCAC
TTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCT
TCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCA
TAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTAC
TTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCCCTGT
AGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCC
TTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGGCATCATTCACTCGTCACGATATAAAGA
TGTATATCATGCAGCGAGAGCTTCATTGCGTCTGACTCAGAATACAAACT
TGGAAGGTTGTGGGATTGCAGAAAGGAATGCATCCTCTTAAGAAGGGGGC
TTAATGTCACCAAAAGCATACAAAATGATATGGGGGACAGTCGGGGTAAA
GCTGCTAGCTTCCCTGACTGTGGAAATGTCATGGGATAGCAGGAGTGAAG
TGAGAGGAGAGTCTCCAGCTACATTCTAGTTGCCTGCACAGCTTCCCACA
GGGACCTGAGTGACAACTGACTAGTCATCCTTGATCACTGGAGCTGAACA
ATTAAGTAAATGAATGGCGGGGGTTGGGGTAGCCAAATTTCTCACTGTCC
AAGTGGGAACTGACAGCTTTACCCAGATAGTATGGCTGGACGGAGTCCTG
TGATAGTTTATTAAGCTTGGAGACACTTTGAAGAGATCATACTTAACCAG
ATACAGTTGCAGATGGACATGTGTTAAAAGGCAGCTTGTATAGACACACA
GGTCAGTACTTACATATGTGTCTCTTTAATAGCTTTCTTAGGTCCGTTGG
GCTACATGAGCAAGCAAACTTTGGGTAGCAATGGCACTCCTAGTACACAG
GTTATGGCTCTTTATACCATAATTTAATGAGGGAAGGATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_o08.g1 MSMg01no524_o08.g1 CHROMAT_FILE:
MSMg01no524_o08.g1 PHD_FILE: MSMg01no524_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:18 2005
         (622 letters)



>mm_chr12_28744800_28745821
          Length = 1022

 Score =  909 bits (470), Expect = 0.0
 Identities = 470/470 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcatcattcactcgtcacgatataaagatgtatatcatgcagcgagagcttcattgcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tggcatcattcactcgtcacgatataaagatgtatatcatgcagcgagagcttcattgcg 411

                                                                       
Query: 61  tctgactcagaatacaaacttggaaggttgtgggattgcagaaaggaatgcatcctctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tctgactcagaatacaaacttggaaggttgtgggattgcagaaaggaatgcatcctctta 351

                                                                       
Query: 121 agaagggggcttaatgtcaccaaaagcatacaaaatgatatgggggacagtcggggtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agaagggggcttaatgtcaccaaaagcatacaaaatgatatgggggacagtcggggtaaa 291

                                                                       
Query: 181 gctgctagcttccctgactgtggaaatgtcatgggatagcaggagtgaagtgagaggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gctgctagcttccctgactgtggaaatgtcatgggatagcaggagtgaagtgagaggaga 231

                                                                       
Query: 241 gtctccagctacattctagttgcctgcacagcttcccacagggacctgagtgacaactga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gtctccagctacattctagttgcctgcacagcttcccacagggacctgagtgacaactga 171

                                                                       
Query: 301 ctagtcatccttgatcactggagctgaacaattaagtaaatgaatggcgggggttggggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ctagtcatccttgatcactggagctgaacaattaagtaaatgaatggcgggggttggggt 111

                                                                       
Query: 361 agccaaatttctcactgtccaagtgggaactgacagctttacccagatagtatggctgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 agccaaatttctcactgtccaagtgggaactgacagctttacccagatagtatggctgga 51

                                                             
Query: 421 cggagtcctgtgatagtttattaagcttggagacactttgaagagatcat 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  cggagtcctgtgatagtttattaagcttggagacactttgaagagatcat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)